Stoml1 (stomatin like 1) - Rat Genome Database

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Gene: Stoml1 (stomatin like 1) Chinchilla lanigera
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Symbol: Stoml1
Name: stomatin like 1
RGD ID: 8837033
Description: ENCODES a protein that exhibits ion channel inhibitor activity (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); negative regulation of acid-sensing ion channel activity (ortholog); SMAD protein signal transduction (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colon cancer (ortholog); schizophrenia (ortholog); FOUND IN cytoplasmic vesicle (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: stomatin (EPB72)-like 1; stomatin-like protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554503,693,864 - 3,701,291 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554503,694,197 - 3,701,812 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References


Genomics

Comparative Map Data
Stoml1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554503,693,864 - 3,701,291 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554503,694,197 - 3,701,812 (+)NCBIChiLan1.0ChiLan1.0
STOML1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1573,978,926 - 73,994,622 (-)EnsemblGRCh38hg38GRCh38
GRCh381573,978,926 - 73,994,636 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371574,271,267 - 74,286,963 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361572,062,613 - 72,071,688 (-)NCBINCBI36hg18NCBI36
Build 341572,062,613 - 72,071,688NCBI
Celera1551,152,879 - 51,161,955 (-)NCBI
Cytogenetic Map15q24.1NCBI
HuRef1551,107,393 - 51,118,798 (-)NCBIHuRef
CHM1_11574,393,520 - 74,404,924 (-)NCBICHM1_1
Stoml1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39958,160,443 - 58,169,807 (+)NCBIGRCm39mm39
GRCm39 Ensembl958,160,447 - 58,169,803 (+)Ensembl
GRCm38958,253,160 - 58,262,524 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl958,253,164 - 58,262,520 (+)EnsemblGRCm38mm10GRCm38
MGSCv37958,100,971 - 58,110,331 (+)NCBIGRCm37mm9NCBIm37
MGSCv36958,051,329 - 58,060,655 (+)NCBImm8
Celera955,487,432 - 55,496,724 (+)NCBICelera
Cytogenetic Map9BNCBI
Stoml1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2858,661,980 - 58,669,860 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl858,661,992 - 58,669,860 (+)Ensembl
Rnor_6.0863,037,135 - 63,045,024 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl863,036,976 - 63,045,030 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0862,813,188 - 62,821,072 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4862,052,528 - 62,059,673 (+)NCBIRGSC3.4rn4RGSC3.4
Celera858,124,540 - 58,132,408 (+)NCBICelera
Cytogenetic Map8q24NCBI
STOML1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11571,647,379 - 71,658,827 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1571,647,380 - 71,656,369 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01552,892,400 - 52,903,812 (-)NCBIMhudiblu_PPA_v0panPan3
STOML1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13037,221,013 - 37,232,248 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3037,221,732 - 37,229,941 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3037,156,400 - 37,167,646 (-)NCBI
ROS_Cfam_1.03037,427,995 - 37,439,240 (-)NCBI
UMICH_Zoey_3.13037,379,831 - 37,391,073 (-)NCBI
UNSW_CanFamBas_1.03037,405,777 - 37,416,979 (-)NCBI
UU_Cfam_GSD_1.03037,662,015 - 37,673,278 (-)NCBI
Stoml1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640115,275,597 - 115,284,980 (-)NCBI
SpeTri2.0NW_00493647133,123,662 - 33,133,017 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STOML1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl759,452,117 - 59,462,615 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1759,448,500 - 59,461,208 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2764,073,619 - 64,083,029 (+)NCBISscrofa10.2Sscrofa10.2susScr3
STOML1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1269,494,993 - 9,506,520 (+)NCBI
ChlSab1.1 Ensembl269,497,339 - 9,508,548 (+)Ensembl
Vero_WHO_p1.0NW_023666048132,108,846 - 132,120,249 (-)NCBI
Stoml1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624781494,525 - 509,747 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000008031   ⟹   ENSCLAP00000007911
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554503,693,864 - 3,701,291 (+)Ensembl
RefSeq Acc Id: XM_005393583   ⟹   XP_005393640
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554503,694,197 - 3,701,812 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013518922   ⟹   XP_013374376
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554503,694,438 - 3,701,812 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005393640 (Get FASTA)   NCBI Sequence Viewer  
  XP_013374376 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005393640   ⟸   XM_005393583
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013374376   ⟸   XM_013518922
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCLAP00000007911   ⟸   ENSCLAT00000008031


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000005544 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000007911 ENTREZGENE
Ensembl Transcript ENSCLAT00000008031 ENTREZGENE
NCBI Gene Stoml1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Stoml1  stomatin like 1    stomatin (EPB72)-like 1  Symbol and/or name change 5135510 APPROVED