Efnb3 (ephrin B3) - Rat Genome Database
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Gene: Efnb3 (ephrin B3) Chinchilla lanigera
Analyze
Symbol: Efnb3
Name: ephrin B3
RGD ID: 8835204
Description: ENCODES a protein that exhibits ephrin receptor binding (ortholog); INVOLVED IN adult walking behavior (ortholog); axon choice point recognition (ortholog); axon guidance (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH Diamond-Blackfan anemia (ortholog); dyskeratosis congenita (ortholog); Li-Fraumeni syndrome (ortholog); FOUND IN glutamatergic synapse (ortholog); hippocampal mossy fiber to CA3 synapse (ortholog); integral component of postsynaptic density membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: ephrin-B3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554679,217,796 - 9,224,940 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554679,217,796 - 9,225,223 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Efnb3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554679,217,796 - 9,224,940 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554679,217,796 - 9,225,223 (-)NCBIChiLan1.0ChiLan1.0
EFNB3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl177,705,202 - 7,711,372 (+)EnsemblGRCh38hg38GRCh38
GRCh38177,705,202 - 7,711,372 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37177,608,520 - 7,614,690 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh37177,608,520 - 7,614,693 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36177,549,245 - 7,555,418 (+)NCBINCBI36hg18NCBI36
Build 34177,549,244 - 7,555,416NCBI
Celera177,634,880 - 7,641,053 (+)NCBI
Cytogenetic Map17p13.1NCBI
HuRef177,501,856 - 7,508,029 (+)NCBIHuRef
CHM1_1177,617,673 - 7,623,846 (+)NCBICHM1_1
Efnb3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391169,444,918 - 69,452,428 (-)NCBIGRCm39mm39
GRCm381169,554,092 - 69,561,150 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,554,092 - 69,560,205 (-)EnsemblGRCm38mm10GRCm38
MGSCv371169,367,594 - 69,373,739 (-)NCBIGRCm37mm9NCBIm37
MGSCv361169,370,320 - 69,376,373 (-)NCBImm8
Celera1176,517,045 - 76,523,190 (-)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1142.8NCBI
Efnb3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21054,274,506 - 54,281,951 (-)NCBI
Rnor_6.0 Ensembl1056,161,432 - 56,167,426 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01056,161,431 - 56,168,819 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01055,906,788 - 55,912,782 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41056,373,322 - 56,379,316 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1053,428,729 - 53,434,697 (-)NCBICelera
Cytogenetic Map10q24NCBI
EFNB3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1177,724,982 - 7,731,270 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl177,724,983 - 7,731,270 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0177,737,297 - 7,743,732 (+)NCBIMhudiblu_PPA_v0panPan3
EFNB3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl532,574,134 - 32,594,333 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1532,588,062 - 32,592,390 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Efnb3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936595954,383 - 960,573 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EFNB3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1252,970,484 - 52,976,261 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11252,970,398 - 52,976,260 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21255,198,063 - 55,203,956 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EFNB3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1167,087,116 - 7,093,457 (+)NCBI
ChlSab1.1 Ensembl167,087,584 - 7,093,621 (+)Ensembl
Efnb3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478610,297,795 - 10,304,363 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000011787   ⟹   ENSCLAP00000011650
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554679,217,796 - 9,224,940 (-)Ensembl
RefSeq Acc Id: XM_005399466   ⟹   XP_005399523
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554679,217,796 - 9,224,940 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005399467   ⟹   XP_005399524
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554679,217,796 - 9,225,223 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005399523 (Get FASTA)   NCBI Sequence Viewer  
  XP_005399524 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005399524   ⟸   XM_005399467
- Sequence:
RefSeq Acc Id: XP_005399523   ⟸   XM_005399466
- Sequence:
RefSeq Acc Id: ENSCLAP00000011650   ⟸   ENSCLAT00000011787


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008030 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000011650 ENTREZGENE
Ensembl Transcript ENSCLAT00000011787 ENTREZGENE
NCBI Gene Efnb3 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Efnb3  ephrin B3    ephrin-B3  Symbol and/or name change 5135510 APPROVED