Slc29a3 (solute carrier family 29 member 3) - Rat Genome Database

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Gene: Slc29a3 (solute carrier family 29 member 3) Chinchilla lanigera
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Symbol: Slc29a3
Name: solute carrier family 29 member 3
RGD ID: 8834435
Description: ENCODES a protein that exhibits cytidine transmembrane transporter activity (ortholog); guanine transmembrane transporter activity (ortholog); monoamine transmembrane transporter activity (ortholog); INVOLVED IN adenosine transport (ortholog); cytidine transport (ortholog); dopamine transport (ortholog); ASSOCIATED WITH acanthosis nigricans (ortholog); Asrar Facharzt Haque Syndrome (ortholog); congenital heart disease (ortholog); FOUND IN Golgi apparatus (ortholog); intracellular membrane-bounded organelle (ortholog); late endosome membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: equilibrative nucleoside transporter 3; solute carrier family 29 (equilibrative nucleoside transporter), member 3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543720,071,742 - 20,108,558 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543720,072,915 - 20,108,342 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Slc29a3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543720,071,742 - 20,108,558 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543720,072,915 - 20,108,342 (-)NCBIChiLan1.0ChiLan1.0
SLC29A3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381071,319,259 - 71,381,423 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1071,319,259 - 71,381,423 (+)EnsemblGRCh38hg38GRCh38
GRCh371073,079,016 - 73,123,142 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361072,749,016 - 72,793,153 (+)NCBINCBI36Build 36hg18NCBI36
Build 341072,749,037 - 72,793,146NCBI
Celera1066,361,811 - 66,405,947 (+)NCBICelera
Cytogenetic Map10q22.1NCBI
HuRef1067,073,050 - 67,117,221 (+)NCBIHuRef
CHM1_11073,361,676 - 73,405,808 (+)NCBICHM1_1
T2T-CHM13v2.01072,188,806 - 72,250,962 (+)NCBIT2T-CHM13v2.0
Slc29a3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391060,547,851 - 60,588,624 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1060,547,851 - 60,588,573 (-)EnsemblGRCm39 Ensembl
GRCm381060,712,072 - 60,752,849 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1060,712,072 - 60,752,794 (-)EnsemblGRCm38mm10GRCm38
MGSCv371060,174,820 - 60,215,530 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361060,107,430 - 60,148,134 (-)NCBIMGSCv36mm8
Celera1061,812,213 - 61,853,590 (-)NCBICelera
Cytogenetic Map10B4NCBI
cM Map1031.38NCBI
Slc29a3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82029,191,086 - 29,228,299 (-)NCBIGRCr8
mRatBN7.22028,645,265 - 28,685,388 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2028,647,391 - 28,685,388 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2029,663,398 - 29,700,733 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02029,049,711 - 29,087,046 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02029,792,189 - 29,829,528 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02030,289,527 - 30,327,343 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2030,287,424 - 30,327,361 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02032,099,754 - 32,135,978 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42028,041,914 - 28,080,232 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12028,055,735 - 28,094,032 (-)NCBI
Celera2030,085,647 - 30,123,276 (-)NCBICelera
Cytogenetic Map20q11NCBI
SLC29A3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2883,469,319 - 83,513,487 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11083,474,640 - 83,537,500 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01067,789,060 - 67,833,278 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11070,314,373 - 70,358,482 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1070,317,882 - 70,358,482 (+)Ensemblpanpan1.1panPan2
SLC29A3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1422,094,899 - 22,135,066 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl422,097,764 - 22,133,197 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha422,230,842 - 22,271,406 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0422,372,705 - 22,413,264 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl422,372,710 - 22,412,024 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1422,270,416 - 22,310,582 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0422,475,894 - 22,516,436 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0422,828,522 - 22,869,050 (+)NCBIUU_Cfam_GSD_1.0
Slc29a3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721358,925,189 - 58,959,705 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365217,418,184 - 7,452,695 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365217,417,914 - 7,452,695 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC29A3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1474,223,115 - 74,274,646 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11474,222,988 - 74,267,527 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21480,113,925 - 80,157,505 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC29A3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1959,927,957 - 59,979,570 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl959,927,964 - 59,975,174 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604820,572,326 - 20,701,433 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc29a3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247545,296,173 - 5,329,778 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247545,296,083 - 5,330,445 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000024738   ⟹   ENSCLAP00000024503
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543720,071,742 - 20,108,558 (-)Ensembl
RefSeq Acc Id: XM_005390038   ⟹   XP_005390095
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543720,072,915 - 20,108,342 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005390039   ⟹   XP_005390096
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543720,072,915 - 20,104,599 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005390095 (Get FASTA)   NCBI Sequence Viewer  
  XP_005390096 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000024503
  ENSCLAP00000024503.1
RefSeq Acc Id: XP_005390095   ⟸   XM_005390038
- Peptide Label: isoform X1
- UniProtKB: A0A8C2W5B4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005390096   ⟸   XM_005390039
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000024503   ⟸   ENSCLAT00000024738


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000016823 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000024738 ENTREZGENE
  ENSCLAT00000024738.1 UniProtKB/TrEMBL
InterPro Eqnu_transpt UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
NCBI Gene Slc29a3 ENTREZGENE
PANTHER PTHR10332 UniProtKB/TrEMBL
  PTHR10332:SF17 UniProtKB/TrEMBL
Pfam Nucleoside_tran UniProtKB/TrEMBL
PIRSF ENT UniProtKB/TrEMBL
PRINTS DERENTRNSPRT UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/TrEMBL
UniProt A0A8C2W5B4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Slc29a3  solute carrier family 29 member 3    solute carrier family 29 (equilibrative nucleoside transporter), member 3  Symbol and/or name change 5135510 APPROVED