Sox9 (SRY-box transcription factor 9)

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Gene: Sox9 (SRY-box transcription factor 9) Chinchilla lanigera

Analyze

Symbol:

Sox9

Name:

SRY-box transcription factor 9

RGD ID:

8833996

Description:

ENCODES a protein that exhibits beta-catenin binding (ortholog); bHLH transcription factor binding (ortholog); chromatin binding (ortholog); INVOLVED IN anterior head development (ortholog); aortic valve morphogenesis (ortholog); apoptotic process (ortholog); ASSOCIATED WITH 46,XX sex reversal 2 (ortholog); 46,XY sex reversal 10 (ortholog); Animal Mammary Neoplasms (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); protein-containing complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

SRY (sex determining region Y)-box 9; SRY-box 9; transcription factor SOX-9

RGD Orthologs

Human

Mouse

Rat

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955478	940,177 - 945,563 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955478	941,684 - 945,563 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

46,XX sex reversal 2 (ISO)

46,XY sex reversal 10 (ISO)

Animal Mammary Neoplasms (ISO)

autism spectrum disorder (ISO)

Bent Bone Dysplasia Syndrome (ISO)

Bone Fractures (ISO)

campomelic dysplasia (ISO)

Campomelic Dysplasia with Autosomal Sex Reversal (ISO)

carcinoma (ISO)

colorectal cancer (ISO)

Congenital Hand Deformities (ISO)

connective tissue disease (ISO)

Craniofacial Abnormalities (ISO)

Experimental Mammary Neoplasms (ISO)

genetic disease (ISO)

lung cancer (ISO)

lung carcinoma (ISO)

Lung Neoplasms (ISO)

Neoplasm Invasiveness (ISO)

Neoplasm Metastasis (ISO)

nonsyndromic congenital nail disorder 4 (ISO)

prostate cancer (ISO)

Weissenbacher-Zweymuller syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

anterior head development (ISO)

aortic valve morphogenesis (ISO)

apoptotic process (ISO)

astrocyte fate commitment (ISO)

bone mineralization (ISO)

branching involved in ureteric bud morphogenesis (ISO)

bronchus cartilage development (ISO)

cAMP-mediated signaling (ISO)

canonical Wnt signaling pathway (ISO)

cartilage condensation (ISO)

cartilage development (ISO)

cell fate commitment (ISO)

cell population proliferation (ISO)

cell proliferation involved in heart morphogenesis (ISO)

cell-cell adhesion (ISO)

cellular response to epidermal growth factor stimulus (ISO)

cellular response to heparin (ISO)

cellular response to interleukin-1 (ISO)

cellular response to mechanical stimulus (ISO)

cellular response to retinoic acid (ISO)

cellular response to transforming growth factor beta stimulus (ISO)

central nervous system development (ISO)

chondrocyte development (ISO)

chondrocyte differentiation (ISO)

chondrocyte differentiation involved in endochondral bone morphogenesis (ISO)

chondrocyte hypertrophy (ISO)

chromatin remodeling (ISO)

cochlea morphogenesis (ISO)

cytoskeleton organization (ISO)

endocardial cushion morphogenesis (ISO)

endochondral bone morphogenesis (ISO)

endocrine pancreas development (ISO)

epidermal growth factor receptor signaling pathway (ISO)

epithelial cell proliferation (ISO)

epithelial cell proliferation involved in prostatic bud elongation (ISO)

epithelial to mesenchymal transition (ISO)

epithelial tube branching involved in lung morphogenesis (ISO)

ERK1 and ERK2 cascade (ISO)

extracellular matrix assembly (ISO)

extracellular matrix organization (ISO)

gene expression (ISO)

glandular epithelial cell differentiation (ISO)

glial cell fate specification (ISO)

growth plate cartilage chondrocyte growth (ISO)

hair follicle development (ISO)

Harderian gland development (ISO)

heart development (ISO)

heart valve development (ISO)

heart valve formation (ISO)

heart valve morphogenesis (ISO)

homeostasis of number of cells within a tissue (ISO)

intestinal epithelial cell differentiation (ISO)

intestinal epithelial structure maintenance (ISO)

intrahepatic bile duct development (ISO)

lacrimal gland development (ISO)

limb bud formation (ISO)

lung epithelial cell differentiation (ISO)

lung smooth muscle development (ISO)

male germ-line sex determination (ISO)

male gonad development (ISO)

male sex determination (ISO)

mammary gland development (ISO)

mesenchymal cell apoptotic process (ISO)

mesenchymal cell proliferation (ISO)

metanephric nephron tubule formation (ISO)

metanephric tubule development (ISO)

morphogenesis of a branching epithelium (ISO)

negative regulation of apoptotic process (ISO)

negative regulation of beta-catenin-TCF complex assembly (ISO)

negative regulation of biomineral tissue development (ISO)

negative regulation of bone mineralization (ISO)

negative regulation of canonical Wnt signaling pathway (ISO)

negative regulation of chondrocyte differentiation (ISO)

negative regulation of DNA-templated transcription (ISO)

negative regulation of epithelial cell differentiation (ISO)

negative regulation of epithelial cell proliferation (ISO)

negative regulation of fatty acid oxidation (ISO)

negative regulation of gene expression (ISO)

negative regulation of immune system process (ISO)

negative regulation of mesenchymal cell apoptotic process (ISO)

negative regulation of miRNA transcription (ISO)

negative regulation of myoblast differentiation (ISO)

negative regulation of ossification (ISO)

negative regulation of osteoblast differentiation (ISO)

negative regulation of photoreceptor cell differentiation (ISO)

negative regulation of transcription by RNA polymerase II (ISO)

neural crest cell development (ISO)

neuron fate specification (ISO)

Notch signaling pathway (ISO)

notochord development (ISO)

nucleosome assembly (ISO)

oligodendrocyte differentiation (ISO)

ossification (ISO)

otic vesicle development (ISO)

otic vesicle formation (ISO)

positive regulation of branching involved in ureteric bud morphogenesis (ISO)

positive regulation of cartilage development (ISO)

positive regulation of cell population proliferation (ISO)

positive regulation of cell proliferation involved in heart morphogenesis (ISO)

positive regulation of chondrocyte differentiation (ISO)

positive regulation of chondrocyte proliferation (ISO)

positive regulation of DNA-templated transcription (ISO)

positive regulation of epithelial cell differentiation (ISO)

positive regulation of epithelial cell migration (ISO)

positive regulation of epithelial cell proliferation (ISO)

positive regulation of extracellular matrix assembly (ISO)

positive regulation of gene expression (ISO)

positive regulation of kidney development (ISO)

positive regulation of male gonad development (ISO)

positive regulation of mesenchymal cell proliferation (ISO)

positive regulation of mesenchymal stem cell differentiation (ISO)

positive regulation of phosphatidylinositol 3-kinase signaling (ISO)

positive regulation of protein catabolic process (ISO)

positive regulation of protein phosphorylation (ISO)

positive regulation of stem cell proliferation (ISO)

positive regulation of transcription by RNA polymerase II (ISO)

prostate gland development (ISO)

prostate gland morphogenesis (ISO)

protein kinase B signaling (ISO)

protein localization to nucleus (ISO)

protein phosphorylation (ISO)

protein-containing complex assembly (ISO)

regulation of branching involved in lung morphogenesis (ISO)

regulation of cell adhesion (ISO)

regulation of cell cycle process (ISO)

regulation of cell differentiation (ISO)

regulation of cell population proliferation (ISO)

regulation of cell proliferation involved in tissue homeostasis (ISO)

regulation of epithelial cell proliferation involved in lung morphogenesis (ISO)

regulation of gene expression (ISO)

regulation of transcription by RNA polymerase II (ISO)

renal vesicle induction (ISO)

response to fatty acid (ISO)

response to organic cyclic compound (ISO)

retina development in camera-type eye (ISO)

retinal rod cell differentiation (ISO)

Sertoli cell development (ISO)

Sertoli cell differentiation (ISO)

signal transduction (ISO)

skeletal system development (ISO)

somatic stem cell population maintenance (ISO)

spermatogenesis (ISO)

stem cell proliferation (ISO)

tissue homeostasis (ISO)

trachea cartilage development (ISO)

transcription by RNA polymerase II (ISO)

type I pneumocyte differentiation (ISO)

ureter development (ISO)

ureter morphogenesis (ISO)

ureter smooth muscle cell differentiation (ISO)

ureter urothelium development (ISO)

Cellular Component

nucleoplasm (ISO)

nucleus (ISO)

protein-containing complex (ISO)

transcription regulator complex (ISO)

Molecular Function

beta-catenin binding (ISO)

bHLH transcription factor binding (ISO)

chromatin binding (ISO)

cis-regulatory region sequence-specific DNA binding (ISO)

DNA binding (ISO)

DNA-binding transcription activator activity, RNA polymerase II-specific (ISO)

DNA-binding transcription factor activity (ISO)

DNA-binding transcription factor activity, RNA polymerase II-specific (ISO)

pre-mRNA intronic binding (ISO)

protein binding (ISO)

protein kinase A catalytic subunit binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (ISO)

sequence-specific DNA binding (ISO)

sequence-specific double-stranded DNA binding (ISO)

transcription cis-regulatory region binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline

Genomics

Comparative Map Data

Sox9
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955478	940,177 - 945,563 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955478	941,684 - 945,563 (-)	NCBI	ChiLan1.0	ChiLan1.0

SOX9
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	72,121,020 - 72,126,416 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	17	72,121,020 - 72,126,416 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	70,117,161 - 70,122,557 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	67,628,756 - 67,634,156 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	67,628,755 - 67,634,156	NCBI
Celera	17	66,688,499 - 66,693,898 (+)	NCBI		Celera
Cytogenetic Map	17	q24.3	NCBI
HuRef	17	65,510,108 - 65,515,656 (+)	NCBI		HuRef
CHM1_1	17	70,181,222 - 70,186,622 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	72,994,224 - 72,999,619 (+)	NCBI		T2T-CHM13v2.0

Sox9
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	112,673,036 - 112,678,583 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	112,673,050 - 112,678,586 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	112,782,210 - 112,787,757 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	112,782,224 - 112,787,760 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	112,643,524 - 112,649,071 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	112,598,314 - 112,603,839 (+)	NCBI		MGSCv36	mm8
Celera	11	124,540,008 - 124,545,554 (+)	NCBI		Celera
Cytogenetic Map	11	E2	NCBI
cM Map	11	77.27	NCBI

Sox9
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	10	97,806,485 - 97,811,994 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	97,806,485 - 97,811,994 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	102,866,804 - 102,872,316 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	10	102,329,807 - 102,335,320 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	10	97,726,102 - 97,731,622 (+)	NCBI	Rnor_WKY
Rnor_6.0	10	101,288,528 - 101,294,030 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	101,288,489 - 101,293,379 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	100,964,754 - 100,970,581 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	102,392,187 - 102,394,256 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	102,408,236 - 102,408,622 (+)	NCBI
Celera	10	96,424,278 - 96,429,703 (+)	NCBI		Celera
Cytogenetic Map	10	q32.1	NCBI

SOX9
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	17	92,942,491 - 92,947,874 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	66,028,737 - 66,034,122 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	71,491,419 - 71,498,911 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

SOX9
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	8,275,049 - 8,278,172 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	8,275,049 - 8,278,172 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	9,564,949 - 9,568,092 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	8,479,949 - 8,483,108 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	8,479,863 - 8,483,490 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	8,522,923 - 8,526,068 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	8,777,560 - 8,780,707 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	8,722,828 - 8,725,975 (-)	NCBI		UU_Cfam_GSD_1.0

Sox9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	8,350,254 - 8,354,855 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936655	1,847,272 - 1,852,705 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936655	1,849,044 - 1,852,648 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SOX9
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	8,642,158 - 8,647,315 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	8,642,154 - 8,647,315 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	9,029,449 - 9,032,820 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3
Pig Cytomap	12	p13-p11	NCBI

SOX9
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	49,519,749 - 49,523,967 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	49,518,185 - 49,523,898 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	20,379,690 - 20,385,117 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sox9
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624801	2,296,168 - 2,301,596 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624801	2,296,353 - 2,300,853 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005402098	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01055751	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDJ01031941	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSCLAT00000009498 ⟹ ENSCLAP00000009369

RefSeq Status:

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955478	940,177 - 945,563 (-)	Ensembl

RefSeq Acc Id:

XM_005402098 ⟹ XP_005402155

RefSeq Status:

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955478	941,684 - 945,563 (-)	NCBI

Sequence:

show sequence

TCCGCGAGCCGAGAGCGGAGCTCCGAGCTGACTGGGAACTTCTGTAGCGCTGAGACTTGCCAGT
TTCACCCCCGGGAACTTTTTTGCAAGAGGAGAAAAGAAGGGCGCAAGTGCCCCACTTCTGCTCT
TTCTTCCCTTCCTCCTCCTCCTCCTCCTCCATCCTCTCCAATTCGCCTTTCCCTCTTGGAGCAG
GCAGCTGCGGATCAGCCACCCCAGCGCCAGCCTCCAGCAACCAGGTGACGCGCCAGCCTCCCCG
GGAGCCGCTCGCTCCGCGTCCGAGTCCGCGTCCGGGCAGCAGAGGGGAGAGGGGCCCGCGCCTC
CAGTCCCCGAGCCGCCGCGGCTTCTCGCCTTTCCCGGCCACCCGCCGCCTGCCCCGGGCCCGCG
TATGAATCTCCTGGACCCCTTCATGAAGATGACCGACGAGCAGGAGAAGGGCCTGTCCGGCGCC
CCCAGCCCCACCATGTCCGAGGACTCGGCCGGCTCGCCCTGCCCCTCGGGCTCGGGCTCAGACA
CGGAGAACACGCGGCCCCAGGAGAACACGTTCCCCAAGGGCGAGCCGGACCTGAAGAAGGAGAG
CGAGGAGGACAAGTTCCCCGTGTGCATCCGCGAGGCGGTCAGCCAGGTGCTCAAGGGCTACGAC
TGGACGCTGGTGCCCATGCCGGTGCGCGTCAACGGCTCCAGCAAGAACAAACCGCACGTCAAGC
GGCCCATGAACGCCTTCATGGTGTGGGCGCAGGCGGCGCGCAGGAAGCTGGCGGACCAGTACCC
GCACCTGCACAACGCCGAGCTCAGCAAGACGCTGGGCAAGCTCTGGAGACTTCTCAACGAGAGC
GAGAAGCGGCCCTTCGTGGAGGAAGCCGAGCGGCTGCGTGTGCAGCACAAGAAAGACCACCCGG
ATTACAAGTACCAGCCGCGGCGGAGGAAGTCGGTGAAGAACGGACAGGCGGAGGCCGAGGAGGC
CACGGAGCAGACTCACATCTCCCCGAACGCCATCTTCAAAGCGCTGCAGGCCGACTCCCCGCAC
TCCTCGTCCGGCATGAGCGAGGTGCACTCCCCCGGCGAGCACTCGGGACAATCCCAGGGCCCAC
CGACCCCACCCACTACTCCCAAAACCGACGTGCAGCCGGGCAAAGCTGACCTGAAGCGAGAGGG
GCGCCCCCTGCCCGAGGGGGGCAGACAGCCCCCCATCGACTTCCGCGATGTGGACATCGGCGAG
CTGAGCAGCGATGTCATCTCCAACATCGAGACCTTCGACGTGAACGAATTCGACCAGTACCTGC
CTCCCAACGGCCACCCGGGGGTGCCGGCCACGCACGGCCAGGTCACCTACACGGGCAGCTACGG
CATCAGCAGTACCGCAGCGACCCCCGCAGGCGCGGGCCACGTGTGGATGTCCAAGCAGCAGGCG
CCGCCGCCCCCGCAGCAACCCCCGCAGGCCCCGCCAGCCCCGCAGGCCCCCTCCCAGCAGCAGC
AGGCGCCCCCACAGCAGCAGGCCGCGCCCCCGCAACCCCAGCAGGCGCACGCTCTGACCCCGCT
GAGCAGCGAGCCCGGGCAGTCGCAGCGAACCCACATCAAGACAGAGCAGCTGAGCCCCAGCCAC
TACAGCGAGCAACAGCAGCATTCGCCGCAGCAGATCGCCTACAGCCCCTTCAACCTCCCGCACT
ACAGCCCCTCCTACCCGCCCATCACGCGCTCGCAGTACGACTACGCCGACCACCAGGGCTCCGG
CTCCTTCTACAGCCACGCCGCCGGCCAGGGCTCTGGTCTCTATTCCACCTTCACCTACATGAAC
CCCGCCCAGCGCCCCATGTACACCCCCATCGCCGACACCTCCGGGGTTCCTTCCATCCCGCAGA
CCCACAGCCCGCAGCAGTGGGAGCAACCCGTCTACACACAGCTCACCAGACCTTGAGGAGACCT
TCAGCAAAGGCCGAGATGCTCATAACAGTAACCGAAGAAAGAGAGAAACCAGAATTCGCTTTGG
ACGTTTTTGTTTGTTTTCTCCTGTTTCTTAAAGACAGGAAAGCTAAAGGCGGCTCGTTCTGAGA
TTCCAAGACAGAAACATTGTCTATCCAAAACGCACGACCAACTTGTTGCGTGGGAATCAGCGGC
CAGGCCACTCCTGGCTAGGTGGGCCAGCAGCACCCGAGAGGAACTGGACTTCGACTTCGTCAGA
GCAAGTGTGCAGGAGAGTATCGGAGAATCGCGACCCATCTGCTCAATCTCCCTGCCTGTCTGGA
CTTTGTAATTATTTTTTAGCAGTAATTAAAGAAAAAAAAGTCCTCTGTGAGGAATATTCTCTAT
TTTAAATATTTTTAGTATGTACTGTGTATGATTCATTACCATTTGAGGGGATTTATACATATTT
TTAGATTAAAAAAAAACTAAATGCTCTTATTTTTCCAACAGCTAAACTACTTTTAGTTGAACAG
TATGCCCTAGCTTTTCTTGCAACCAGAGTATTTTTGTACAGATTTGCTTTCTCCTACAAAAAAA
AAGAAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005402155	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

XP_005402155 ⟸ XM_005402098

- UniProtKB:

A0A8C2V2L2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MNLLDPFMKMTDEQEKGLSGAPSPTMSEDSAGSPCPSGSGSDTENTRPQENTFPKGEPDLKKES
EEDKFPVCIREAVSQVLKGYDWTLVPMPVRVNGSSKNKPHVKRPMNAFMVWAQAARRKLADQYP
HLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSVKNGQAEAEEA
TEQTHISPNAIFKALQADSPHSSSGMSEVHSPGEHSGQSQGPPTPPTTPKTDVQPGKADLKREG
RPLPEGGRQPPIDFRDVDIGELSSDVISNIETFDVNEFDQYLPPNGHPGVPATHGQVTYTGSYG
ISSTAATPAGAGHVWMSKQQAPPPPQQPPQAPPAPQAPSQQQQAPPQQQAAPPQPQQAHALTPL
SSEPGQSQRTHIKTEQLSPSHYSEQQQHSPQQIAYSPFNLPHYSPSYPPITRSQYDYADHQGSG
SFYSHAAGQGSGLYSTFTYMNPAQRPMYTPIADTSGVPSIPQTHSPQQWEQPVYTQLTRP

hide sequence

RefSeq Acc Id:

ENSCLAP00000009369 ⟸ ENSCLAT00000009498

Protein Domains

HMG box

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000006507	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSCLAP00000009369	ENTREZGENE
	ENSCLAP00000009369.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000009498	ENTREZGENE
	ENSCLAT00000009498.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.30.10	UniProtKB/TrEMBL
InterPro	HMG_box_dom	UniProtKB/TrEMBL
	HMG_box_dom_sf	UniProtKB/TrEMBL
	Sox_N	UniProtKB/TrEMBL
NCBI Gene	LOC102020005	ENTREZGENE
PANTHER	PTHR45803:SF1	UniProtKB/TrEMBL
	SOX100B	UniProtKB/TrEMBL
Pfam	HMG_box	UniProtKB/TrEMBL
	Sox_N	UniProtKB/TrEMBL
PROSITE	HMG_BOX_2	UniProtKB/TrEMBL
SMART	HMG	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47095	UniProtKB/TrEMBL
UniProt	A0A8C2V2L2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-06-18	Sox9	SRY-box transcription factor 9	Sox9	SRY-box 9	Symbol and/or name change	5135510	APPROVED
2016-08-16	Sox9	SRY-box 9		SRY (sex determining region Y)-box 9	Symbol and/or name change	5135510	APPROVED
2015-08-25	Sox9	SRY (sex determining region Y)-box 9	LOC102020005	transcription factor SOX-9-like	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM