Znhit6 (zinc finger HIT-type containing 6) - Rat Genome Database

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Gene: Znhit6 (zinc finger HIT-type containing 6) Chinchilla lanigera
Analyze
Symbol: Znhit6
Name: zinc finger HIT-type containing 6
RGD ID: 8833306
Description: ENCODES a protein that exhibits ATPase binding (ortholog); enzyme binding (ortholog); identical protein binding (ortholog); INVOLVED IN box C/D snoRNP assembly (ortholog); protein complex oligomerization (ortholog); snoRNA localization (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN pre-snoRNP complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: box C/D snoRNA protein 1; zinc finger, HIT-type containing 6
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554238,309,521 - 8,362,951 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554238,309,533 - 8,359,601 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Znhit6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554238,309,521 - 8,362,951 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554238,309,533 - 8,359,601 (+)NCBIChiLan1.0ChiLan1.0
ZNHIT6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38185,649,417 - 85,708,433 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl185,649,417 - 85,708,433 (-)EnsemblGRCh38hg38GRCh38
GRCh37186,115,100 - 86,174,116 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36185,891,079 - 85,946,689 (-)NCBINCBI36Build 36hg18NCBI36
Celera184,359,216 - 84,418,317 (-)NCBICelera
Cytogenetic Map1p22.3NCBI
HuRef184,225,885 - 84,285,169 (-)NCBIHuRef
CHM1_1186,230,534 - 86,289,502 (-)NCBICHM1_1
T2T-CHM13v2.0185,490,231 - 85,549,278 (-)NCBIT2T-CHM13v2.0
Znhit6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393145,281,943 - 145,313,570 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3145,281,960 - 145,310,550 (+)EnsemblGRCm39 Ensembl
GRCm383145,576,201 - 145,605,245 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3145,576,205 - 145,604,795 (+)EnsemblGRCm38mm10GRCm38
MGSCv373145,239,172 - 145,268,209 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363145,513,591 - 145,542,631 (+)NCBIMGSCv36mm8
Celera3152,028,856 - 152,057,972 (+)NCBICelera
Cytogenetic Map3H2NCBI
cM Map369.89NCBI
Znhit6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82237,147,014 - 237,178,279 (+)NCBIGRCr8
mRatBN7.22234,486,686 - 234,517,952 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2234,486,704 - 234,517,960 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2242,283,835 - 242,315,731 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02240,174,387 - 240,206,269 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02235,041,451 - 235,073,351 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02251,453,503 - 251,484,760 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2251,453,644 - 251,484,759 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02269,981,414 - 270,012,985 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42243,746,296 - 243,778,317 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12243,732,952 - 243,764,916 (+)NCBI
Celera2226,474,975 - 226,506,057 (+)NCBICelera
Cytogenetic Map2q44NCBI
ZNHIT6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21141,221,467 - 141,277,316 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11140,376,850 - 140,432,505 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01118,213,412 - 118,269,103 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1187,068,740 - 87,124,138 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl187,068,740 - 87,124,138 (-)Ensemblpanpan1.1panPan2
ZNHIT6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1662,335,344 - 62,393,418 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl662,335,275 - 62,418,564 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha664,984,742 - 65,069,699 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0662,876,255 - 62,961,241 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl662,876,359 - 62,934,234 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1662,406,460 - 62,491,383 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0662,373,858 - 62,458,753 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0662,878,404 - 62,963,596 (+)NCBIUU_Cfam_GSD_1.0
Znhit6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505896,211,261 - 96,272,623 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493660833,384 - 93,335 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493660833,425 - 94,291 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNHIT6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4130,298,280 - 130,386,955 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14130,298,109 - 130,409,569 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24142,854,256 - 142,875,043 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.24142,666,132 - 142,794,709 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZNHIT6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12047,666,100 - 47,720,015 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2047,666,297 - 47,722,160 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603370,088,520 - 70,143,107 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znhit6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474211,767,896 - 11,817,031 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474211,767,738 - 11,818,060 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000016519   ⟹   ENSCLAP00000016355
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554238,309,521 - 8,362,951 (+)Ensembl
RefSeq Acc Id: XM_005385133   ⟹   XP_005385190
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554238,309,533 - 8,359,601 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005385135   ⟹   XP_005385192
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554238,309,533 - 8,359,601 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005385190 (Get FASTA)   NCBI Sequence Viewer  
  XP_005385192 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000016355
  ENSCLAP00000016355.1
Reference Protein Sequences
RefSeq Acc Id: XP_005385190   ⟸   XM_005385133
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VPG2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005385192   ⟸   XM_005385135
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000016355   ⟸   ENSCLAT00000016519
Protein Domains
HIT-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011251 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000016519 ENTREZGENE
  ENSCLAT00000016519.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.60.190 UniProtKB/TrEMBL
InterPro Znf_HIT UniProtKB/TrEMBL
NCBI Gene Znhit6 ENTREZGENE
PANTHER BOX C/D SNORNA PROTEIN 1 UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam zf-HIT UniProtKB/TrEMBL
PROSITE ZF_HIT UniProtKB/TrEMBL
Superfamily-SCOP HIT/MYND zinc finger-like UniProtKB/TrEMBL
UniProt A0A8C2VPG2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Znhit6  zinc finger HIT-type containing 6    zinc finger, HIT-type containing 6  Symbol and/or name change 5135510 APPROVED