Znhit6 (zinc finger HIT-type containing 6) - Rat Genome Database

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Gene: Znhit6 (zinc finger HIT-type containing 6) Chinchilla lanigera
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Symbol: Znhit6
Name: zinc finger HIT-type containing 6
RGD ID: 8833306
Description: ENCODES a protein that exhibits ATPase binding (ortholog); enzyme binding (ortholog); identical protein binding (ortholog); INVOLVED IN box C/D snoRNP assembly (ortholog); protein complex oligomerization (ortholog); snoRNA localization (ortholog); FOUND IN pre-snoRNP complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: box C/D snoRNA protein 1; zinc finger, HIT-type containing 6
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554238,309,521 - 8,362,951 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554238,309,533 - 8,359,601 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Znhit6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554238,309,521 - 8,362,951 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554238,309,533 - 8,359,601 (+)NCBIChiLan1.0ChiLan1.0
ZNHIT6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38185,649,417 - 85,708,433 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl185,649,417 - 85,708,433 (-)EnsemblGRCh38hg38GRCh38
GRCh37186,115,100 - 86,174,116 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36185,891,079 - 85,946,689 (-)NCBINCBI36Build 36hg18NCBI36
Celera184,359,216 - 84,418,317 (-)NCBICelera
Cytogenetic Map1p22.3NCBI
HuRef184,225,885 - 84,285,169 (-)NCBIHuRef
CHM1_1186,230,534 - 86,289,502 (-)NCBICHM1_1
T2T-CHM13v2.0185,490,231 - 85,549,278 (-)NCBIT2T-CHM13v2.0
Znhit6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393145,281,943 - 145,313,570 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3145,281,960 - 145,310,550 (+)EnsemblGRCm39 Ensembl
GRCm383145,576,201 - 145,605,245 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3145,576,205 - 145,604,795 (+)EnsemblGRCm38mm10GRCm38
MGSCv373145,239,172 - 145,268,209 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363145,513,591 - 145,542,631 (+)NCBIMGSCv36mm8
Celera3152,028,856 - 152,057,972 (+)NCBICelera
Cytogenetic Map3H2NCBI
cM Map369.89NCBI
Znhit6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82237,147,014 - 237,178,279 (+)NCBIGRCr8
mRatBN7.22234,486,686 - 234,517,952 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2234,486,704 - 234,517,960 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2242,283,835 - 242,315,731 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02240,174,387 - 240,206,269 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02235,041,451 - 235,073,351 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02251,453,503 - 251,484,760 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2251,453,644 - 251,484,759 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02269,981,414 - 270,012,985 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42243,746,296 - 243,778,317 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12243,732,952 - 243,764,916 (+)NCBI
Celera2226,474,975 - 226,506,057 (+)NCBICelera
Cytogenetic Map2q44NCBI
ZNHIT6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21141,221,467 - 141,277,316 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11140,376,850 - 140,432,505 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01118,213,412 - 118,269,103 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1187,068,740 - 87,124,138 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl187,068,740 - 87,124,138 (-)Ensemblpanpan1.1panPan2
ZNHIT6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1662,335,344 - 62,393,418 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl662,335,275 - 62,418,564 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha664,984,742 - 65,069,699 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0662,876,255 - 62,961,241 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl662,876,359 - 62,934,234 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1662,406,460 - 62,491,383 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0662,373,858 - 62,458,753 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0662,878,404 - 62,963,596 (+)NCBIUU_Cfam_GSD_1.0
Znhit6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505896,211,261 - 96,272,623 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493660833,384 - 93,335 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493660833,425 - 94,291 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNHIT6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4130,298,280 - 130,386,955 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14130,298,109 - 130,409,569 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24142,854,256 - 142,875,043 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.24142,666,132 - 142,794,709 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZNHIT6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12047,666,100 - 47,720,015 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2047,666,297 - 47,722,160 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603370,088,520 - 70,143,107 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znhit6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474211,767,896 - 11,817,031 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474211,767,738 - 11,818,060 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000016519   ⟹   ENSCLAP00000016355
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554238,309,521 - 8,362,951 (+)Ensembl
RefSeq Acc Id: XM_005385133   ⟹   XP_005385190
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554238,309,533 - 8,359,601 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005385135   ⟹   XP_005385192
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554238,309,533 - 8,359,601 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005385190 (Get FASTA)   NCBI Sequence Viewer  
  XP_005385192 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000016355
  ENSCLAP00000016355.1
RefSeq Acc Id: XP_005385190   ⟸   XM_005385133
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VPG2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005385192   ⟸   XM_005385135
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSCLAP00000016355   ⟸   ENSCLAT00000016519
Protein Domains
HIT-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011251 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000016519 ENTREZGENE
  ENSCLAT00000016519.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.60.190 UniProtKB/TrEMBL
InterPro BCD1 UniProtKB/TrEMBL
  Znf_HIT UniProtKB/TrEMBL
NCBI Gene Znhit6 ENTREZGENE
PANTHER BOX C/D SNORNA PROTEIN 1 UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam zf-HIT UniProtKB/TrEMBL
PROSITE ZF_HIT UniProtKB/TrEMBL
Superfamily-SCOP HIT/MYND zinc finger-like UniProtKB/TrEMBL
UniProt A0A8C2VPG2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Znhit6  zinc finger HIT-type containing 6    zinc finger, HIT-type containing 6  Symbol and/or name change 5135510 APPROVED