Phf20l1 (PHD finger protein 20 like 1) - Rat Genome Database

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Gene: Phf20l1 (PHD finger protein 20 like 1) Chinchilla lanigera
Analyze
Symbol: Phf20l1
Name: PHD finger protein 20 like 1
RGD ID: 8833098
Description: ENCODES a protein that exhibits methylation-dependent protein binding (ortholog); INVOLVED IN negative regulation of proteasomal ubiquitin-dependent protein catabolic process (ortholog); negative regulation of protein catabolic process (ortholog); ASSOCIATED WITH benign neonatal seizures (ortholog); Charcot-Marie-Tooth disease type 4 (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: PHD finger protein 20-like 1; PHD finger protein 20-like protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554617,391,175 - 7,465,012 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554617,391,175 - 7,465,012 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Phf20l1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554617,391,175 - 7,465,012 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554617,391,175 - 7,465,012 (+)NCBIChiLan1.0ChiLan1.0
PHF20L1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388132,775,388 - 132,848,807 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8132,775,358 - 132,848,807 (+)EnsemblGRCh38hg38GRCh38
GRCh378133,787,634 - 133,861,052 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368133,856,786 - 133,930,234 (+)NCBINCBI36Build 36hg18NCBI36
Celera8129,963,424 - 130,036,873 (+)NCBICelera
Cytogenetic Map8q24.22NCBI
HuRef8129,105,970 - 129,179,737 (+)NCBIHuRef
CHM1_18133,828,260 - 133,901,705 (+)NCBICHM1_1
T2T-CHM13v2.08133,898,574 - 133,971,990 (+)NCBIT2T-CHM13v2.0
Phf20l1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391566,449,354 - 66,519,821 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1566,449,409 - 66,519,825 (+)EnsemblGRCm39 Ensembl
GRCm381566,577,500 - 66,647,043 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1566,577,560 - 66,647,976 (+)EnsemblGRCm38mm10GRCm38
MGSCv371566,409,134 - 66,476,817 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361566,407,229 - 66,474,924 (+)NCBIMGSCv36mm8
Celera1568,109,460 - 68,177,172 (+)NCBICelera
Cytogenetic Map15D1- D2NCBI
cM Map1529.3NCBI
Phf20l1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87100,219,598 - 100,285,580 (+)NCBIGRCr8
mRatBN7.2798,330,580 - 98,396,526 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl798,330,580 - 98,396,526 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7100,091,172 - 100,157,051 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07102,292,828 - 102,358,712 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07102,212,176 - 102,278,059 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07108,613,731 - 108,759,741 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.07107,406,948 - 107,445,219 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7107,406,962 - 107,442,513 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl7108,613,739 - 108,756,747 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07108,561,690 - 108,702,689 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.07107,345,695 - 107,377,124 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47103,945,838 - 103,976,140 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera794,883,054 - 94,948,977 (+)NCBICelera
Cytogenetic Map7q33NCBI
PHF20L1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27150,161,464 - 150,235,987 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18125,676,073 - 125,750,575 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08129,427,157 - 129,500,633 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18132,403,053 - 132,477,338 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8132,403,053 - 132,474,452 (+)Ensemblpanpan1.1panPan2
PHF20L1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11329,260,381 - 29,338,345 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1329,260,373 - 29,336,623 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1329,233,299 - 29,311,273 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01329,615,091 - 29,693,214 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1329,615,088 - 29,693,145 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11329,341,760 - 29,419,748 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01329,442,157 - 29,520,162 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01329,754,137 - 29,832,180 (+)NCBIUU_Cfam_GSD_1.0
Phf20l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053038,980,523 - 9,049,549 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647016,406,653 - 16,475,586 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647016,406,293 - 16,475,384 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PHF20L1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl48,394,897 - 8,468,297 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.148,394,874 - 8,468,309 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.248,437,176 - 8,510,591 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PHF20L1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18127,201,612 - 127,275,378 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8127,201,658 - 127,272,501 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603912,830,762 - 12,906,089 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Phf20l1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473523,101,075 - 23,171,145 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473523,101,075 - 23,171,195 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000001937   ⟹   ENSCLAP00000001894
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554617,391,175 - 7,465,012 (+)Ensembl
RefSeq Acc Id: XM_013521336   ⟹   XP_013376790
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554617,391,175 - 7,465,012 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013521337   ⟹   XP_013376791
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554617,391,175 - 7,465,012 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013521338   ⟹   XP_013376792
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554617,391,175 - 7,465,012 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013376790 (Get FASTA)   NCBI Sequence Viewer  
  XP_013376791 (Get FASTA)   NCBI Sequence Viewer  
  XP_013376792 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000001894
  ENSCLAP00000001894.1
Reference Protein Sequences
RefSeq Acc Id: XP_013376792   ⟸   XM_013521338
- UniProtKB: A0A8C2YIV5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013376791   ⟸   XM_013521337
- UniProtKB: A0A8C2YIV5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013376790   ⟸   XM_013521336
- UniProtKB: A0A8C2YIV5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000001894   ⟸   ENSCLAT00000001937
Protein Domains
Agenet   Tudor


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000001398 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000001937 ENTREZGENE
  ENSCLAT00000001937.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.140 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
InterPro Agenet_dom_plant UniProtKB/TrEMBL
  KDM4_Tudor_2 UniProtKB/TrEMBL
  PHF20-like UniProtKB/TrEMBL
  Tudor UniProtKB/TrEMBL
  Tudor_PHF20L1 UniProtKB/TrEMBL
  Zinc_finger_PHD-type_CS UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
NCBI Gene Phf20l1 ENTREZGENE
PANTHER PHD FINGER PROTEIN 20-LIKE PROTEIN 1 UniProtKB/TrEMBL
  PTHR15856 UniProtKB/TrEMBL
Pfam PHD20L1_u1 UniProtKB/TrEMBL
  PHD_5 UniProtKB/TrEMBL
  Tudor_2 UniProtKB/TrEMBL
PROSITE ZF_PHD_1 UniProtKB/TrEMBL
SMART Agenet UniProtKB/TrEMBL
  TUDOR UniProtKB/TrEMBL
Superfamily-SCOP SSF57903 UniProtKB/TrEMBL
  Tudor/PWWP/MBT UniProtKB/TrEMBL
UniProt A0A8C2YIV5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-05-16 Phf20l1  PHD finger protein 20 like 1    PHD finger protein 20-like 1  Symbol and/or name change 5135510 APPROVED