Bms1 (BMS1 ribosome biogenesis factor) - Rat Genome Database

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Gene: Bms1 (BMS1 ribosome biogenesis factor) Chinchilla lanigera
Analyze
Symbol: Bms1
Name: BMS1 ribosome biogenesis factor
RGD ID: 8832805
Description: INVOLVED IN ribosomal small subunit biogenesis (ortholog); PARTICIPATES IN ribosome biogenesis pathway; ASSOCIATED WITH ectodermal dysplasia (ortholog); genetic disease (ortholog); nonsyndromic aplasia cutis congenita (ortholog); FOUND IN chromosome (ortholog); nucleolus (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: BMS1, ribosome biogenesis factor; ribosome biogenesis protein BMS1 homolog
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555461,054,209 - 1,092,327 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555461,054,208 - 1,089,048 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Bms1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555461,054,209 - 1,092,327 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555461,054,208 - 1,089,048 (+)NCBIChiLan1.0ChiLan1.0
BMS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381042,782,795 - 42,834,937 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1042,782,795 - 42,834,937 (+)EnsemblGRCh38hg38GRCh38
GRCh371043,278,243 - 43,330,385 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361042,598,265 - 42,646,856 (+)NCBINCBI36Build 36hg18NCBI36
Build 341042,598,264 - 42,646,855NCBI
Celera1039,281,288 - 39,333,715 (+)NCBICelera
Cytogenetic Map10q11.21NCBI
HuRef1039,804,351 - 39,856,723 (+)NCBIHuRef
CHM1_11043,317,039 - 43,369,460 (+)NCBICHM1_1
T2T-CHM13v2.01043,660,231 - 43,712,380 (+)NCBIT2T-CHM13v2.0
Bms1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396118,360,342 - 118,396,772 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6118,360,342 - 118,396,435 (-)EnsemblGRCm39 Ensembl
GRCm386118,383,381 - 118,419,802 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6118,383,381 - 118,419,474 (-)EnsemblGRCm38mm10GRCm38
MGSCv376118,333,399 - 118,369,435 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366118,349,000 - 118,385,036 (-)NCBIMGSCv36mm8
Celera6120,205,779 - 120,241,558 (-)NCBICelera
Cytogenetic Map6F1NCBI
cM Map655.86NCBI
Bms1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84153,230,471 - 153,267,437 (-)NCBIGRCr8
mRatBN7.24151,558,163 - 151,595,187 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4151,558,163 - 151,595,127 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4157,821,518 - 157,857,787 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04153,605,181 - 153,641,448 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04152,228,528 - 152,264,795 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04150,433,567 - 150,471,783 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4150,433,570 - 150,471,834 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04216,359,608 - 216,395,631 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44154,687,169 - 154,721,783 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14154,932,012 - 154,969,857 (-)NCBI
Celera4140,428,894 - 140,464,833 (-)NCBICelera
Cytogenetic Map4q42NCBI
BMS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2855,496,708 - 55,546,250 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11055,502,023 - 55,551,579 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01039,757,627 - 39,806,401 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11042,942,439 - 42,983,304 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1042,944,081 - 42,990,235 (+)Ensemblpanpan1.1panPan2
BMS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1284,178,625 - 4,235,749 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl284,178,627 - 4,234,052 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha284,413,712 - 4,470,894 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0284,395,173 - 4,452,876 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1284,157,600 - 4,214,741 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0284,200,389 - 4,257,562 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0284,334,938 - 4,392,112 (-)NCBIUU_Cfam_GSD_1.0
Bms1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721384,098,623 - 84,153,392 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366172,636,222 - 2,686,456 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366172,636,273 - 2,685,524 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BMS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1461,087,670 - 61,125,980 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11461,056,075 - 61,125,984 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21465,917,854 - 65,956,269 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BMS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1938,459,322 - 38,503,090 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl938,459,237 - 38,505,560 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605647,986,334 - 48,030,992 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bms1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624922173,652 - 212,107 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624922173,616 - 209,170 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000003488   ⟹   ENSCLAP00000003418
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555461,054,209 - 1,092,327 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000003489   ⟹   ENSCLAP00000003419
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555461,055,651 - 1,092,327 (+)Ensembl
RefSeq Acc Id: XM_005411758   ⟹   XP_005411815
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555461,054,208 - 1,089,048 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005411759   ⟹   XP_005411816
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555461,055,334 - 1,089,048 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005411761   ⟹   XP_005411818
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555461,054,209 - 1,089,048 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005411815 (Get FASTA)   NCBI Sequence Viewer  
  XP_005411816 (Get FASTA)   NCBI Sequence Viewer  
  XP_005411818 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000003418
  ENSCLAP00000003418.1
  ENSCLAP00000003419.1
Reference Protein Sequences
RefSeq Acc Id: XP_005411815   ⟸   XM_005411758
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005411818   ⟸   XM_005411761
- Peptide Label: isoform X2
- UniProtKB: A0A8C2YJL1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005411816   ⟸   XM_005411759
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCLAP00000003419   ⟸   ENSCLAT00000003489
RefSeq Acc Id: ENSCLAP00000003418   ⟸   ENSCLAT00000003488
Protein Domains
Bms1-type G


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002446 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000003488 ENTREZGENE
  ENSCLAT00000003488.1 UniProtKB/TrEMBL
  ENSCLAT00000003489.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro AARP2CN UniProtKB/TrEMBL
  Bms1/Tsr1 UniProtKB/TrEMBL
  Bms1_N UniProtKB/TrEMBL
  BMS1_TSR1_C UniProtKB/TrEMBL
  G_Bms1/Tsr1_dom UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene Bms1 ENTREZGENE
PANTHER PTHR12858 UniProtKB/TrEMBL
  RIBOSOME BIOGENESIS PROTEIN BMS1 HOMOLOG UniProtKB/TrEMBL
Pfam AARP2CN UniProtKB/TrEMBL
  RIBIOP_C UniProtKB/TrEMBL
PROSITE G_BMS1 UniProtKB/TrEMBL
SMART AARP2CN UniProtKB/TrEMBL
  DUF663 UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8C2YJL1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-01-29 Bms1  BMS1 ribosome biogenesis factor    BMS1, ribosome biogenesis factor  Symbol and/or name change 5135510 APPROVED
2016-08-16 Bms1  BMS1, ribosome biogenesis factor    BMS1 ribosome biogenesis factor  Symbol and/or name change 5135510 APPROVED