Khnyn (KH and NYN domain containing) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Khnyn (KH and NYN domain containing) Chinchilla lanigera
Analyze
Symbol: Khnyn
Name: KH and NYN domain containing
RGD ID: 8831700
Description: ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); genetic disease (ortholog); lysinuric protein intolerance (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540935,872,087 - 35,879,565 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540935,871,214 - 35,880,233 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Khnyn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540935,872,087 - 35,879,565 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540935,871,214 - 35,880,233 (-)NCBIChiLan1.0ChiLan1.0
KHNYN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381424,423,165 - 24,441,843 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1424,429,286 - 24,441,843 (+)EnsemblGRCh38hg38GRCh38
GRCh371424,898,492 - 24,911,049 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361423,968,981 - 23,980,388 (+)NCBINCBI36Build 36hg18NCBI36
Build 341423,969,015 - 23,980,380NCBI
Celera144,763,777 - 4,775,184 (+)NCBICelera
Cytogenetic Map14q12NCBI
HuRef145,013,796 - 5,025,205 (+)NCBIHuRef
CHM1_11424,897,714 - 24,909,123 (+)NCBICHM1_1
T2T-CHM13v2.01418,621,854 - 18,640,575 (+)NCBIT2T-CHM13v2.0
Khnyn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391456,122,269 - 56,136,237 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1456,122,404 - 56,136,232 (+)EnsemblGRCm39 Ensembl
GRCm381455,884,812 - 55,898,780 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1455,884,947 - 55,898,775 (+)EnsemblGRCm38mm10GRCm38
MGSCv371456,503,806 - 56,515,618 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361454,839,040 - 54,850,852 (+)NCBIMGSCv36mm8
Celera1453,688,754 - 53,700,503 (+)NCBICelera
Cytogenetic Map14C3NCBI
cM Map1428.19NCBI
Khnyn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81533,335,290 - 33,349,553 (+)NCBIGRCr8
mRatBN7.21529,365,399 - 29,379,650 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1529,365,260 - 29,376,967 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01534,551,570 - 34,563,729 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1534,552,410 - 34,561,727 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01538,439,886 - 38,453,708 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41534,007,904 - 34,040,500 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1528,939,031 - 28,951,631 (+)NCBICelera
Cytogenetic Map15p13NCBI
KHNYN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21525,784,267 - 25,793,374 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11425,000,510 - 25,009,868 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0145,205,650 - 5,216,436 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11423,328,835 - 23,340,957 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1423,329,932 - 23,340,966 (+)Ensemblpanpan1.1panPan2
KHNYN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.184,402,719 - 4,411,688 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl84,403,201 - 4,411,598 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha84,315,953 - 4,333,389 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.084,503,588 - 4,523,336 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl84,514,475 - 4,523,334 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.184,193,020 - 4,212,669 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.084,255,640 - 4,275,355 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.084,517,825 - 4,537,560 (+)NCBIUU_Cfam_GSD_1.0
Khnyn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864036,264,142 - 36,272,967 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936722116,611 - 124,832 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936722116,025 - 124,890 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KHNYN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl774,854,379 - 74,874,882 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1774,854,209 - 74,872,491 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2780,125,232 - 80,136,080 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KHNYN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1241,412,264 - 1,420,960 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl241,413,306 - 1,419,852 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603613,098,182 - 13,110,195 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Khnyn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248208,075,413 - 8,084,232 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248208,074,069 - 8,084,817 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000021426   ⟹   ENSCLAP00000021225
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540935,872,087 - 35,879,565 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000021427   ⟹   ENSCLAP00000021226
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540935,873,306 - 35,879,548 (-)Ensembl
RefSeq Acc Id: XM_005376998   ⟹   XP_005377055
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540935,871,214 - 35,880,231 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005376999   ⟹   XP_005377056
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540935,871,214 - 35,880,231 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001232667
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540935,874,070 - 35,880,233 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005377055 (Get FASTA)   NCBI Sequence Viewer  
  XP_005377056 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000021225
  ENSCLAP00000021225.1
  ENSCLAP00000021226.1
Reference Protein Sequences
RefSeq Acc Id: XP_005377056   ⟸   XM_005376999
- UniProtKB: A0A8C2VXN3 (UniProtKB/TrEMBL),   A0A8C2VZX2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005377055   ⟸   XM_005376998
- UniProtKB: A0A8C2VXN3 (UniProtKB/TrEMBL),   A0A8C2VZX2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000021225   ⟸   ENSCLAT00000021426
RefSeq Acc Id: ENSCLAP00000021226   ⟸   ENSCLAT00000021427
Protein Domains
RNase NYN


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000014539 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000021426 ENTREZGENE
  ENSCLAT00000021426.1 UniProtKB/TrEMBL
  ENSCLAT00000021427.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.11980 UniProtKB/TrEMBL
InterPro KH_dom_type_1_sf UniProtKB/TrEMBL
  RNase_Zc3h12_NYN UniProtKB/TrEMBL
NCBI Gene Khnyn ENTREZGENE
PANTHER N4BP1-RELATED UniProtKB/TrEMBL
  PROTEIN KHNYN UniProtKB/TrEMBL
Pfam RNase_Zc3h12a UniProtKB/TrEMBL
Superfamily-SCOP SSF54791 UniProtKB/TrEMBL
UniProt A0A8C2VXN3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VZX2 ENTREZGENE, UniProtKB/TrEMBL