Atl3 (atlastin GTPase 3) - Rat Genome Database

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Gene: Atl3 (atlastin GTPase 3) Chinchilla lanigera
Analyze
Symbol: Atl3
Name: atlastin GTPase 3
RGD ID: 8831066
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN endoplasmic reticulum organization (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); Golgi organization (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease axonal type 2N (ortholog); genetic disease (ortholog); hereditary sensory neuropathy type 1F (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum tubular network (ortholog); endoplasmic reticulum tubular network membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: atlastin-3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542221,359,524 - 21,409,590 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542221,359,152 - 21,406,151 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Atl3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542221,359,524 - 21,409,590 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542221,359,152 - 21,406,151 (+)NCBIChiLan1.0ChiLan1.0
ATL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381163,624,087 - 63,671,974 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1163,624,087 - 63,671,921 (-)EnsemblGRCh38hg38GRCh38
GRCh371163,391,559 - 63,439,446 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361163,153,013 - 63,195,659 (-)NCBINCBI36Build 36hg18NCBI36
Celera1160,720,452 - 60,763,095 (-)NCBICelera
Cytogenetic Map11q13.1NCBI
HuRef1159,725,790 - 59,768,502 (-)NCBIHuRef
CHM1_11163,279,444 - 63,322,096 (-)NCBICHM1_1
T2T-CHM13v2.01163,613,427 - 63,661,313 (-)NCBIT2T-CHM13v2.0
Atl3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39197,471,178 - 7,515,974 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl197,471,405 - 7,517,039 (+)EnsemblGRCm39 Ensembl
GRCm38197,494,015 - 7,538,609 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl197,494,040 - 7,539,674 (+)EnsemblGRCm38mm10GRCm38
MGSCv37197,568,530 - 7,613,099 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36197,561,621 - 7,602,228 (+)NCBIMGSCv36mm8
Celera197,265,651 - 7,310,123 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map195.32NCBI
Atl3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81214,110,127 - 214,151,098 (+)NCBIGRCr8
mRatBN7.21204,680,958 - 204,727,360 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1204,680,968 - 204,723,354 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1213,030,832 - 213,071,796 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01220,126,175 - 220,167,147 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01212,817,229 - 212,858,202 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01222,746,023 - 222,788,439 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1222,746,023 - 222,786,942 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01229,732,744 - 229,775,614 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41210,177,817 - 210,219,558 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11210,336,514 - 210,377,846 (+)NCBI
Celera1202,213,164 - 202,254,102 (+)NCBICelera
Cytogenetic Map1q43NCBI
ATL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2964,850,281 - 64,900,464 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11165,895,531 - 65,945,798 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01158,980,645 - 59,029,720 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11162,332,569 - 62,380,932 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1162,337,788 - 62,380,598 (-)Ensemblpanpan1.1panPan2
ATL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11853,306,544 - 53,364,012 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1853,306,364 - 53,360,311 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1851,913,835 - 51,971,498 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01854,352,309 - 54,409,448 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1854,344,260 - 54,407,618 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11853,453,818 - 53,511,774 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01853,028,991 - 53,086,726 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01853,814,964 - 53,872,952 (+)NCBIUU_Cfam_GSD_1.0
Atl3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049478,999,682 - 9,060,949 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365995,442,063 - 5,503,318 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365995,442,060 - 5,503,298 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATL3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl28,361,774 - 8,408,917 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.128,361,579 - 8,408,920 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.227,615,361 - 7,649,356 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1110,569,052 - 10,611,518 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl110,569,235 - 10,611,323 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038107,914,263 - 107,963,622 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atl3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476722,567,757 - 22,609,115 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476722,567,888 - 22,610,214 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000024921   ⟹   ENSCLAP00000024683
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542221,359,524 - 21,404,890 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000024922   ⟹   ENSCLAP00000024684
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542221,359,616 - 21,409,590 (+)Ensembl
RefSeq Acc Id: XM_005384671   ⟹   XP_005384728
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542221,359,616 - 21,406,151 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005384672   ⟹   XP_005384729
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542221,359,152 - 21,406,151 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005384728 (Get FASTA)   NCBI Sequence Viewer  
  XP_005384729 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000024683
  ENSCLAP00000024683.1
  ENSCLAP00000024684
  ENSCLAP00000024684.1
RefSeq Acc Id: XP_005384729   ⟸   XM_005384672
- Peptide Label: isoform X2
- UniProtKB: A0A8C2W5R6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005384728   ⟸   XM_005384671
- Peptide Label: isoform X1
- UniProtKB: A0A8C2W8I7 (UniProtKB/TrEMBL),   A0A8C2W5R6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000024683   ⟸   ENSCLAT00000024921
RefSeq Acc Id: ENSCLAP00000024684   ⟸   ENSCLAT00000024922
Protein Domains
GB1/RHD3-type G


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000016950 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000024921 ENTREZGENE
  ENSCLAT00000024921.1 UniProtKB/TrEMBL
  ENSCLAT00000024922 ENTREZGENE
  ENSCLAT00000024922.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
  AHSP UniProtKB/TrEMBL
InterPro G_GB1_RHD3_dom UniProtKB/TrEMBL
  Guanylate-bd/ATL_C UniProtKB/TrEMBL
  Guanylate-bd_C_sf UniProtKB/TrEMBL
  Guanylate-bd_N UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene Atl3 ENTREZGENE
PANTHER ATLASTIN-3 UniProtKB/TrEMBL
  GUANYLATE BINDING PROTEIN UniProtKB/TrEMBL
Pfam GBP UniProtKB/TrEMBL
  GBP_C UniProtKB/TrEMBL
PROSITE G_GB1_RHD3 UniProtKB/TrEMBL
Superfamily-SCOP SSF48340 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A8C2W5R6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2W8I7 ENTREZGENE, UniProtKB/TrEMBL