Dnajc3 (DnaJ heat shock protein family (Hsp40) member C3) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Dnajc3 (DnaJ heat shock protein family (Hsp40) member C3) Chinchilla lanigera
Analyze
Symbol: Dnajc3
Name: DnaJ heat shock protein family (Hsp40) member C3
RGD ID: 8830887
Description: ENCODES a protein that exhibits chaperone binding (ortholog); misfolded protein binding (ortholog); protein kinase binding (ortholog); INVOLVED IN cellular response to cold (ortholog); negative regulation of apoptotic process (ortholog); negative regulation of endoplasmic reticulum stress-induced eIF2 alpha phosphorylation (ortholog); ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); Combined Cerebellar and Peripheral Ataxia with Hearing Loss and Diabetes Mellitus (ortholog); holoprosencephaly 5 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: DnaJ (Hsp40) homolog, subfamily C, member 3; dnaJ homolog subfamily C member 3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540414,360,832 - 14,412,533 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540414,361,540 - 14,412,533 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISS annotations to Chinchilla, Squirrel, Bonobo and/or Dog genes from Human gene annotations

Genomics

Comparative Map Data
Dnajc3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540414,360,832 - 14,412,533 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540414,361,540 - 14,412,533 (-)NCBIChiLan1.0ChiLan1.0
DNAJC3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381395,677,139 - 95,794,988 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1395,677,139 - 95,794,988 (+)EnsemblGRCh38hg38GRCh38
GRCh371396,329,393 - 96,447,242 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361395,127,484 - 95,241,285 (+)NCBINCBI36hg18NCBI36
Build 341395,127,483 - 95,241,285NCBI
Celera1377,177,188 - 77,295,039 (+)NCBI
Cytogenetic Map13q32.1NCBI
HuRef1376,927,193 - 77,044,763 (+)NCBIHuRef
CHM1_11396,299,542 - 96,417,377 (+)NCBICHM1_1
T2T-CHM13v2.01394,881,700 - 94,999,557 (+)NCBI
Dnajc3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914119,175,344 - 119,219,114 (+)NCBIGRCm39mm39
GRCm39 Ensembl14119,175,388 - 119,219,109 (+)Ensembl
GRCm3814118,937,932 - 118,981,702 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14118,937,976 - 118,981,697 (+)EnsemblGRCm38mm10GRCm38
MGSCv3714119,337,154 - 119,380,924 (+)NCBIGRCm37mm9NCBIm37
MGSCv3614119,337,209 - 119,379,121 (+)NCBImm8
Celera14117,490,628 - 117,537,345 (+)NCBICelera
Cytogenetic Map14E4NCBI
Dnajc3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21596,025,729 - 96,065,114 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1596,025,624 - 96,065,181 (+)Ensembl
Rnor_6.015104,186,918 - 104,226,236 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl15104,186,792 - 104,226,329 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.015107,610,329 - 107,649,355 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.415103,881,634 - 103,921,295 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.115103,897,413 - 103,937,075 (+)NCBI
Celera1594,875,150 - 94,914,827 (+)NCBICelera
Cytogenetic Map15q24NCBI
DNAJC3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11395,975,607 - 96,114,256 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1396,033,605 - 96,114,165 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01376,853,053 - 76,963,530 (+)NCBIMhudiblu_PPA_v0panPan3
DNAJC3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12246,323,263 - 46,402,240 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2246,307,905 - 46,398,625 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2246,093,175 - 46,185,499 (+)NCBI
ROS_Cfam_1.02246,737,351 - 46,829,808 (+)NCBI
ROS_Cfam_1.0 Ensembl2246,736,369 - 46,844,494 (+)Ensembl
UMICH_Zoey_3.12246,400,716 - 46,493,029 (+)NCBI
UNSW_CanFamBas_1.02246,433,934 - 46,526,175 (+)NCBI
UU_Cfam_GSD_1.02246,439,531 - 46,531,587 (+)NCBI
Dnajc3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945181,825,991 - 181,896,607 (+)NCBI
SpeTri2.0NW_00493647214,055,548 - 14,126,173 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNAJC3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1165,230,162 - 65,303,834 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11165,230,145 - 65,299,084 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21172,092,332 - 72,161,773 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DNAJC3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1374,474,643 - 74,582,942 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl374,474,548 - 74,579,048 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604630,900,130 - 31,009,831 (+)NCBIVero_WHO_p1.0
Dnajc3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248792,369,237 - 2,434,433 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248792,369,332 - 2,434,433 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000003491   ⟹   ENSCLAP00000003421
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540414,360,832 - 14,412,533 (-)Ensembl
RefSeq Acc Id: XM_005374098   ⟹   XP_005374155
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540414,361,540 - 14,412,533 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005374155 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005374155   ⟸   XM_005374098
- Sequence:
RefSeq Acc Id: ENSCLAP00000003421   ⟸   ENSCLAT00000003491
Protein Domains
J


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002448 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000003421 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000003491 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.110 UniProtKB/TrEMBL
  1.25.40.10 UniProtKB/TrEMBL
InterPro DnaJ_domain UniProtKB/TrEMBL
  J_dom_sf UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/TrEMBL
  TPR_21 UniProtKB/TrEMBL
  TPR_repeat UniProtKB/TrEMBL
NCBI Gene Dnajc3 ENTREZGENE
Pfam DnaJ UniProtKB/TrEMBL
  TPR_21 UniProtKB/TrEMBL
  TPR_8 UniProtKB/TrEMBL
PRINTS JDOMAIN UniProtKB/TrEMBL
PROSITE DNAJ_2 UniProtKB/TrEMBL
  TPR UniProtKB/TrEMBL
SMART DnaJ UniProtKB/TrEMBL
  TPR UniProtKB/TrEMBL
Superfamily-SCOP SSF46565 UniProtKB/TrEMBL
  SSF48452 UniProtKB/TrEMBL
UniProt A0A8C2UUP2_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Dnajc3  DnaJ heat shock protein family (Hsp40) member C3    DnaJ (Hsp40) homolog, subfamily C, member 3  Symbol and/or name change 5135510 APPROVED