Hdc (histidine decarboxylase) - Rat Genome Database

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Gene: Hdc (histidine decarboxylase) Chinchilla lanigera
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Symbol: Hdc
Name: histidine decarboxylase
RGD ID: 8830504
Description: ENCODES a protein that exhibits amino acid binding (ortholog); histidine decarboxylase activity (ortholog); identical protein binding (ortholog); INVOLVED IN histamine biosynthetic process (ortholog); histamine metabolic process (ortholog); histidine catabolic process (ortholog); PARTICIPATES IN histidine metabolic pathway; histidinemia pathway; ASSOCIATED WITH asthma (ortholog); Bloom syndrome (ortholog); Chlamydophila Infections (ortholog); FOUND IN dendrite (ortholog); neuronal cell body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554094,051,271 - 4,072,642 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554094,051,574 - 4,072,641 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Hdc
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554094,051,271 - 4,072,642 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554094,051,574 - 4,072,641 (+)NCBIChiLan1.0ChiLan1.0
HDC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381550,241,947 - 50,265,726 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1550,241,947 - 50,265,965 (-)EnsemblGRCh38hg38GRCh38
GRCh371550,534,144 - 50,557,923 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361548,321,436 - 48,345,218 (-)NCBINCBI36Build 36hg18NCBI36
Build 341548,321,442 - 48,345,214NCBI
Celera1527,426,734 - 27,450,752 (-)NCBICelera
Cytogenetic Map15q21.2NCBI
HuRef1527,365,086 - 27,389,097 (-)NCBIHuRef
CHM1_11550,652,084 - 50,676,103 (-)NCBICHM1_1
T2T-CHM13v2.01548,050,179 - 48,073,964 (-)NCBIT2T-CHM13v2.0
Hdc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392126,435,579 - 126,465,942 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2126,435,587 - 126,461,219 (-)EnsemblGRCm39 Ensembl
GRCm382126,593,659 - 126,624,025 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2126,593,667 - 126,619,299 (-)EnsemblGRCm38mm10GRCm38
MGSCv372126,419,404 - 126,444,401 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362126,285,109 - 126,310,106 (-)NCBIMGSCv36mm8
Celera2127,832,271 - 127,857,347 (-)NCBICelera
Cytogenetic Map2F1NCBI
cM Map261.76NCBI
Hdc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83134,300,628 - 134,318,704 (-)NCBIGRCr8
mRatBN7.23113,847,256 - 113,865,334 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3113,847,260 - 113,865,341 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3117,730,587 - 117,748,889 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03126,326,119 - 126,344,421 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03123,986,497 - 124,004,800 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03119,057,524 - 119,075,599 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3119,057,517 - 119,075,619 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03125,585,190 - 125,603,276 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43114,119,316 - 114,138,107 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13114,024,891 - 114,043,687 (-)NCBI
Celera3112,689,823 - 112,707,916 (-)NCBICelera
Cytogenetic Map3q36NCBI
HDC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21639,480,087 - 39,504,191 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11543,664,223 - 43,688,339 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01529,188,296 - 29,212,327 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11547,510,629 - 47,534,577 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1547,510,629 - 47,534,577 (-)Ensemblpanpan1.1panPan2
HDC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13016,201,222 - 16,223,452 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3016,201,589 - 16,223,662 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3016,127,350 - 16,149,277 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03016,345,121 - 16,367,075 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3016,345,127 - 16,367,248 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13016,267,658 - 16,289,600 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03016,385,120 - 16,407,243 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03016,491,552 - 16,513,689 (-)NCBIUU_Cfam_GSD_1.0
Hdc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864094,455,739 - 94,476,903 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647112,304,130 - 12,324,570 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647112,303,802 - 12,324,613 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HDC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1121,505,751 - 121,525,252 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11121,505,677 - 121,525,416 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21135,147,966 - 135,167,683 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HDC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12633,051,048 - 33,074,872 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2633,051,966 - 33,074,563 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048108,074,673 - 108,095,456 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hdc
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247319,835,596 - 9,856,743 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247319,835,585 - 9,856,743 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000017580   ⟹   ENSCLAP00000017410
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554094,051,271 - 4,072,642 (+)Ensembl
RefSeq Acc Id: XM_005376674   ⟹   XP_005376731
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554094,051,574 - 4,072,641 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005376731 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000017410
  ENSCLAP00000017410.1
RefSeq Acc Id: XP_005376731   ⟸   XM_005376674
- UniProtKB: A0A8C2VTD0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000017410   ⟸   ENSCLAT00000017580


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011960 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000017580 ENTREZGENE
  ENSCLAT00000017580.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.640.10 UniProtKB/TrEMBL
  3.90.1150.10 UniProtKB/TrEMBL
  dopa decarboxylase, N-terminal domain UniProtKB/TrEMBL
InterPro Aromatic_deC UniProtKB/TrEMBL
  PyrdxlP-dep_de-COase UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase_major UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase_small UniProtKB/TrEMBL
  Pyridoxal-P_BS UniProtKB/TrEMBL
NCBI Gene Hdc ENTREZGENE
PANTHER GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE UniProtKB/TrEMBL
  HISTIDINE DECARBOXYLASE UniProtKB/TrEMBL
Pfam Pyridoxal_deC UniProtKB/TrEMBL
PRINTS YHDCRBOXLASE UniProtKB/TrEMBL
PROSITE DDC_GAD_HDC_YDC UniProtKB/TrEMBL
Superfamily-SCOP SSF53383 UniProtKB/TrEMBL
UniProt A0A8C2VTD0 ENTREZGENE, UniProtKB/TrEMBL