Ndufs5 (NADH:ubiquinone oxidoreductase subunit S5) - Rat Genome Database

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Gene: Ndufs5 (NADH:ubiquinone oxidoreductase subunit S5) Chinchilla lanigera
Analyze
Symbol: Ndufs5
Name: NADH:ubiquinone oxidoreductase subunit S5
RGD ID: 8830130
Description: INVOLVED IN mitochondrial respiratory chain complex I assembly (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); genetic disease (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial respiratory chain complex I (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase); NADH dehydrogenase [ubiquinone] iron-sulfur protein 5
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545216,634,537 - 16,641,344 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545216,634,537 - 16,641,344 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Ndufs5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545216,634,537 - 16,641,344 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545216,634,537 - 16,641,344 (+)NCBIChiLan1.0ChiLan1.0
NDUFS5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38139,026,350 - 39,034,615 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl139,026,318 - 39,034,636 (+)EnsemblGRCh38hg38GRCh38
GRCh37139,492,022 - 39,500,287 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36139,264,593 - 39,272,874 (+)NCBINCBI36Build 36hg18NCBI36
Build 34139,161,098 - 39,169,379NCBI
Celera137,772,450 - 37,780,784 (+)NCBICelera
Cytogenetic Map1p34.3NCBI
HuRef137,611,448 - 37,619,691 (+)NCBIHuRef
CHM1_1139,607,376 - 39,615,715 (+)NCBICHM1_1
T2T-CHM13v2.0138,893,542 - 38,901,803 (+)NCBIT2T-CHM13v2.0
Ndufs5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394123,606,503 - 123,611,979 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4123,606,503 - 123,611,995 (-)EnsemblGRCm39 Ensembl
GRCm384123,712,710 - 123,718,186 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4123,712,710 - 123,718,202 (-)EnsemblGRCm38mm10GRCm38
MGSCv374123,389,953 - 123,395,429 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364123,215,013 - 123,220,489 (-)NCBIMGSCv36mm8
Celera4122,046,646 - 122,052,111 (-)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map457.42NCBI
Ndufs5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85141,258,828 - 141,264,552 (-)NCBIGRCr8
mRatBN7.25135,974,029 - 135,979,705 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2182,339,360 - 182,339,853 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl14103,351,386 - 103,351,706 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl5135,974,034 - 135,979,603 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5138,680,263 - 138,685,862 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05140,450,258 - 140,455,857 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05140,457,422 - 140,463,021 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05141,390,577 - 141,405,507 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5141,390,580 - 141,405,453 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05145,178,499 - 145,196,014 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45143,017,421 - 143,023,425 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15143,027,417 - 143,058,784 (-)NCBI
Celera5134,511,122 - 134,516,696 (-)NCBICelera
Cytogenetic Map5q36NCBI
NDUFS5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21187,799,682 - 187,808,556 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11186,937,361 - 186,945,736 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0138,304,225 - 38,312,608 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1139,651,660 - 39,659,266 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl139,651,659 - 39,659,266 (+)Ensemblpanpan1.1panPan2
NDUFS5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1153,741,863 - 3,748,973 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl153,741,867 - 3,821,625 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha153,979,922 - 3,987,016 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0153,863,536 - 3,870,638 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl153,863,540 - 3,942,800 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1153,731,307 - 3,738,391 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0153,798,745 - 3,805,838 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0153,814,265 - 3,821,387 (-)NCBIUU_Cfam_GSD_1.0
Ndufs5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505855,179,723 - 55,187,960 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647421,004,036 - 21,012,767 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647421,004,476 - 21,012,742 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDUFS5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl694,913,076 - 94,919,452 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1694,913,406 - 94,919,458 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2687,962,957 - 87,968,997 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NDUFS5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366603322,970,108 - 22,978,785 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ndufs5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476421,604,185 - 21,613,246 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476421,603,890 - 21,613,360 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000013417   ⟹   ENSCLAP00000013265
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495545216,634,537 - 16,641,344 (+)Ensembl
RefSeq Acc Id: XM_005395239   ⟹   XP_005395296
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545216,634,664 - 16,641,344 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005395240   ⟹   XP_005395297
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545216,634,671 - 16,641,344 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005395241   ⟹   XP_005395298
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545216,634,672 - 16,641,344 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005395242   ⟹   XP_005395299
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545216,634,537 - 16,641,344 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005395296 (Get FASTA)   NCBI Sequence Viewer  
  XP_005395297 (Get FASTA)   NCBI Sequence Viewer  
  XP_005395298 (Get FASTA)   NCBI Sequence Viewer  
  XP_005395299 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000013265
  ENSCLAP00000013265.1
Reference Protein Sequences
RefSeq Acc Id: XP_005395299   ⟸   XM_005395242
- UniProtKB: A0A8C2VDG7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005395296   ⟸   XM_005395239
- UniProtKB: A0A8C2VDG7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005395297   ⟸   XM_005395240
- UniProtKB: A0A8C2VDG7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005395298   ⟸   XM_005395241
- UniProtKB: A0A8C2VDG7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000013265   ⟸   ENSCLAT00000013417


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000009162 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000013417 ENTREZGENE
  ENSCLAT00000013417.1 UniProtKB/TrEMBL
InterPro NADH_UbQ_OxRdtase_FeS-su5 UniProtKB/TrEMBL
NCBI Gene Ndufs5 ENTREZGENE
PANTHER NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 5 UniProtKB/TrEMBL
  PTHR15224 UniProtKB/TrEMBL
Pfam Ndufs5 UniProtKB/TrEMBL
PROSITE CHCH UniProtKB/TrEMBL
UniProt A0A8C2VDG7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Ndufs5  NADH:ubiquinone oxidoreductase subunit S5    NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase)  Symbol and/or name change 5135510 APPROVED