Srd5a2 (steroid 5 alpha-reductase 2)

Gene: Srd5a2 (steroid 5 alpha-reductase 2) Chinchilla lanigera

Analyze

Symbol:

Srd5a2

Name:

steroid 5 alpha-reductase 2

RGD ID:

8830058

Description:

ENCODES a protein that exhibits 3-oxo-5-alpha-steroid 4-dehydrogenase activity (ortholog); 3-oxo-5alpha-steroid 4-dehydrogenase (NADP+) activity (ortholog); amide binding (ortholog); INVOLVED IN androgen biosynthetic process (ortholog); androgen metabolic process (ortholog); biphenyl metabolic process (ortholog); PARTICIPATES IN testosterone biosynthetic pathway; ASSOCIATED WITH alopecia (ortholog); autism spectrum disorder (ortholog); Autoinflammation with Infantile Enterocolitis (ortholog); FOUND IN cell body fiber (ortholog); neuronal cell body (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

3-oxo-5-alpha-steroid 4-dehydrogenase 2; steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955441	10,443 - 95,743 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955441	12,149 - 95,733 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

alopecia (ISO)

autism spectrum disorder (ISO)

Autoinflammation with Infantile Enterocolitis (ISO)

breast carcinoma (ISO)

diabetes mellitus (ISO)

Endometrial Neoplasms (ISO)

endometriosis (ISO)

familial cold autoinflammatory syndrome 4 (ISO)

genetic disease (ISO)

hereditary spastic paraplegia 4 (ISO)

hyperprolactinemia (ISO)

hypogonadism (ISO)

hypospadias (ISO)

Penis Agenesis (ISO)

prostate cancer (ISO)

prostatic hypertrophy (ISO)

Prostatic Neoplasms (ISO)

Pseudovaginal Perineoscrotal Hypospadias (ISO)

xanthinuria (ISO)

xanthinuria type II (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

androgen biosynthetic process (ISO)

androgen metabolic process (ISO)

biphenyl metabolic process (ISO)

bone development (ISO)

dibenzo-p-dioxin metabolic process (ISO)

female genitalia development (ISO)

hippocampus development (ISO)

hypothalamus development (ISO)

male genitalia development (ISO)

male gonad development (ISO)

phthalate metabolic process (ISO)

response to biphenyl (ISO)

response to follicle-stimulating hormone (ISO)

response to nutrient levels (ISO)

response to organic cyclic compound (ISO)

response to peptide hormone (ISO)

response to steroid hormone (ISO)

response to testosterone (ISO)

response to xenobiotic stimulus (ISO)

steroid biosynthetic process (ISO)

steroid catabolic process (ISO)

testosterone biosynthetic process (ISO)

Cellular Component

cell body fiber (ISO)

neuronal cell body (ISO)

Molecular Function

3-oxo-5-alpha-steroid 4-dehydrogenase activity (ISO)

3-oxo-5alpha-steroid 4-dehydrogenase (NADP+) activity (ISO)

amide binding (ISO)

protein binding (ISO)

testosterone dehydrogenase [NAD(P)] activity (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

testosterone biosynthetic pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Srd5a2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955441	10,443 - 95,743 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955441	12,149 - 95,733 (-)	NCBI	ChiLan1.0	ChiLan1.0

SRD5A2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	31,522,480 - 31,663,009 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	31,522,480 - 31,580,938 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	31,747,550 - 31,806,007 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	31,603,160 - 31,659,544 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	31,661,306 - 31,717,691	NCBI
Celera	2	31,590,884 - 31,647,296 (-)	NCBI		Celera
Cytogenetic Map	2	p23.1	NCBI
HuRef	2	31,485,637 - 31,542,001 (-)	NCBI		HuRef
CHM1_1	2	31,678,089 - 31,734,473 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	31,567,195 - 31,707,768 (-)	NCBI		T2T-CHM13v2.0

Srd5a2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	74,321,886 - 74,354,855 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	74,323,950 - 74,354,911 (-)	Ensembl		GRCm39 Ensembl
GRCm38	17	74,014,891 - 74,047,860 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	74,016,955 - 74,047,916 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	74,367,046 - 74,397,256 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	73,922,606 - 73,952,814 (-)	NCBI		MGSCv36	mm8
Celera	17	78,309,438 - 78,339,442 (-)	NCBI		Celera
Cytogenetic Map	17	E2	NCBI
cM Map	17	45.39	NCBI

Srd5a2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	27,178,089 - 27,217,588 (+)	NCBI		GRCr8
mRatBN7.2	6	21,426,225 - 21,465,727 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	21,426,215 - 21,462,112 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	21,755,011 - 21,794,514 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	22,070,851 - 22,110,348 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	21,551,287 - 21,590,788 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	25,279,635 - 25,315,501 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	25,279,626 - 25,315,511 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	35,127,532 - 35,163,398 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	21,453,521 - 21,489,408 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	21,456,473 - 21,492,397 (+)	NCBI
Celera	6	20,976,906 - 21,012,848 (+)	NCBI		Celera
Cytogenetic Map	6	q13	NCBI

SRD5A2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	94,913,580 - 94,967,170 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	94,917,555 - 94,971,145 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	31,542,646 - 31,597,394 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	31,610,487 - 31,665,718 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	31,610,487 - 31,665,718 (-)	Ensembl	panpan1.1		panPan2

SRD5A2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	25,017,113 - 25,056,156 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	25,017,113 - 25,056,544 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	24,811,155 - 24,850,233 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	25,580,015 - 25,620,097 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	25,580,843 - 25,620,171 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	24,887,475 - 24,926,628 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	24,946,476 - 24,985,654 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	25,049,043 - 25,087,911 (-)	NCBI		UU_Cfam_GSD_1.0

Srd5a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	69,130,023 - 69,175,570 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936493	1,663,911 - 1,708,502 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936493	1,663,999 - 1,708,530 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SRD5A2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	107,840,200 - 107,918,350 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	107,840,200 - 107,918,351 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	114,644,279 - 114,657,350 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SRD5A2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	75,915,495 - 75,971,280 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	75,917,260 - 75,970,365 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	36,088,943 - 36,288,753 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Srd5a2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624738	13,253,729 - 13,321,448 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624738	13,254,998 - 13,321,360 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005390834	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01036675	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01036676	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01036677	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01036678	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01286957	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000007004 ⟹ ENSCLAP00000006892

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955441	10,443 - 95,743 (-)	Ensembl

RefSeq Acc Id:

XM_005390834 ⟹ XP_005390891

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955441	12,149 - 95,733 (-)	NCBI

Sequence:

show sequence

CCGCGGAGAGCGAGGCGCGATGCCGGTCCGGTGTCAGGAGAGTACGGTACTGGCAGGTAGCGCC
ACTTTGGTCACCTTGGGGGTAATGGCTCTATGCGCCTCGGAGCCCTGGCCCTACGGGAAGTACA
GCAAGAGGTCTGCGCCCGAGGCCACGCGCCTGCCCGCCCGCGCCGCCTGGTTCCTGCAAGAGCT
GCCTTCCTTCTTGGTCCCCCTAGGGATCCTTGTCCAGAAGCCCGGCTTTCTCTTCGGACCTCCC
GAGGCTGTGCTTCTGGGGCTCTTCTGCGTGCATTACTTCCACAGGACTTTTATTTACTCACTTC
TCACTAGAGGGAGGCCTTATCCAGCCTTGTTCCTTTTCCAAGGAATAGTCTTCTGCATTGGAAA
TGGACTCCTTCAAAGCTACTATCTGATTTTCTGTGCAGAATACCCTGAAGAGTGGTACACAGAT
GTTCGGTTTAGCTTGGGTGTCTTCCTATTTATTTTGGGAATGGGAATCAATATTCATAGTGACT
ATACCTTGCGCCAGCTCAGAAAGCCTGGAGAAGTCACCTACAGGATTCCACAAGGTGGCATGTT
TACATATGTTTCGGGAGCAAATTTCCTTGGTGAGATTATTGAATGGATTGGCTATGCCTTGGCC
ACTTGGTCTGTTCCTGCACTTGCTTTTGCATTTTTCTCGTTTTGTTTCCTTGGGATTCGAGCTG
TTCACCACCATAGGTTCTACCTCAAGATGTTTGAGGACTACCCTAAGTCTCGGAAAGCGCTTAT
TCCATTTATCTTCTAAAGAAACCAAGTCAAACAGGAGCAAACCTCCCACAATGACAGTGAAAAC
TGTCAAGCTGCTAAAACTGTGATTTGTGAAATTCCACTCTATACATATAGTAAATGTATACATA
CCTGTATACGTGTAATTATGCATATATCCATATGATCCATACATAGGAGTAGGTCTCTTGTTCT
GCCTGCCGGCCTGGGAATTCTCAGTGGTGCCTGCTTAGTTTCCTCCTACCCTGCCAGGGAGACT
GGCGACTGGAGACCCAGTTTCCTACTGCAGCTTCAGAAAGGTTTTTCCAGATGAAAAATCTCCT
TAGCTATCCCTGCTATAAATACAAAGCTTCCCTCCATGTGTTTTTCTCCCTGAATGATCCAAAT
CCATGCGGCTTTCTCCTACTCTGAATCTGTGTGGTACACCTCTGTAGTTGAGACTGTTTGGGGC
TAAGGTAGTGCTCAGGAGCTTACTAAGGTATACATTTTGTACTTATACAGGACAGCAGAGATTT
AAATTGTGAATAGATGCAGAGCATAGCCACTCCTCAATGAAAACCTAGCCATGCCTTCTCTTCG
TTTGTTCATATAAAATAGCAGGTGTTTAATAAAGAAGCCTTCTGCTTATGTGGCTGAAAATATA
ACTGGCATGTTGACTCTAAGTAACATTTGCATAGTGTCT

hide sequence

Protein Sequences


Protein RefSeqs	XP_005390891	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000006892
	ENSCLAP00000006892.1

RefSeq Acc Id:

XP_005390891 ⟸ XM_005390834

- UniProtKB:

A0A8C2V0A2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPVRCQESTVLAGSATLVTLGVMALCASEPWPYGKYSKRSAPEATRLPARAAWFLQELPSFLVP
LGILVQKPGFLFGPPEAVLLGLFCVHYFHRTFIYSLLTRGRPYPALFLFQGIVFCIGNGLLQSY
YLIFCAEYPEEWYTDVRFSLGVFLFILGMGINIHSDYTLRQLRKPGEVTYRIPQGGMFTYVSGA
NFLGEIIEWIGYALATWSVPALAFAFFSFCFLGIRAVHHHRFYLKMFEDYPKSRKALIPFIF

hide sequence

RefSeq Acc Id:

ENSCLAP00000006892 ⟸ ENSCLAT00000007004

Protein Domains

Steroid 5-alpha reductase C-terminal

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000004854	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000007004	ENTREZGENE
	ENSCLAT00000007004.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.120.1630	UniProtKB/TrEMBL
InterPro	3-oxo-5-alpha-steroid_4-DH	UniProtKB/TrEMBL
	3-oxo-5_a-steroid_4-DH_C	UniProtKB/TrEMBL
	SRD5A/TECR	UniProtKB/TrEMBL
NCBI Gene	LOC102020288	ENTREZGENE
PANTHER	3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE 2	UniProtKB/TrEMBL
	PTHR10556	UniProtKB/TrEMBL
Pfam	Steroid_dh	UniProtKB/TrEMBL
PIRSF	5_alpha-SR2	UniProtKB/TrEMBL
PROSITE	S5A_REDUCTASE	UniProtKB/TrEMBL
UniProt	A0A8C2V0A2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-03	Srd5a2	steroid 5 alpha-reductase 2		steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)	Symbol and/or name change	5135510	APPROVED
2015-08-25	Srd5a2	steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)	LOC102020288	3-oxo-5-alpha-steroid 4-dehydrogenase 2-like	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations