St3gal6 (ST3 beta-galactoside alpha-2,3-sialyltransferase 6) - Rat Genome Database

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Gene: St3gal6 (ST3 beta-galactoside alpha-2,3-sialyltransferase 6) Chinchilla lanigera
Analyze
Symbol: St3gal6
Name: ST3 beta-galactoside alpha-2,3-sialyltransferase 6
RGD ID: 8829933
Description: ENCODES a protein that exhibits beta-galactoside (CMP) alpha-2,3-sialyltransferase activity (ortholog); INVOLVED IN cellular response to interleukin-6 (ortholog); protein glycosylation (ortholog); ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: type 2 lactosamine alpha-2,3-sialyltransferase
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955427397,870 - 450,187 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
St3gal6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955427397,870 - 450,187 (+)NCBIChiLan1.0ChiLan1.0
ST3GAL6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38398,732,262 - 98,795,852 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl398,732,236 - 98,821,201 (+)EnsemblGRCh38hg38GRCh38
GRCh37398,451,106 - 98,514,696 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36399,934,262 - 99,995,927 (+)NCBINCBI36Build 36hg18NCBI36
Build 34399,934,261 - 99,995,924NCBI
Celera396,843,261 - 96,904,902 (+)NCBICelera
Cytogenetic Map3q12.1NCBI
HuRef395,823,269 - 95,886,702 (+)NCBIHuRef
CHM1_1398,414,233 - 98,477,819 (+)NCBICHM1_1
T2T-CHM13v2.03101,440,560 - 101,504,133 (+)NCBIT2T-CHM13v2.0
St3gal6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391658,290,105 - 58,344,614 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1658,288,488 - 58,344,606 (-)EnsemblGRCm39 Ensembl
GRCm381658,469,742 - 58,524,260 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1658,468,125 - 58,524,243 (-)EnsemblGRCm38mm10GRCm38
MGSCv371658,470,654 - 58,523,425 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361658,413,084 - 58,465,855 (-)NCBIMGSCv36mm8
Celera1658,755,151 - 58,808,030 (-)NCBICelera
Cytogenetic Map16C1.2NCBI
cM Map1634.58NCBI
St3gal6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81155,530,120 - 55,590,950 (+)NCBIGRCr8
mRatBN7.21142,061,282 - 42,121,801 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1142,077,621 - 42,121,776 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1150,825,401 - 50,869,574 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01143,486,970 - 43,531,142 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01142,615,593 - 42,659,766 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01144,176,518 - 44,237,119 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1144,192,940 - 44,237,100 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01147,366,048 - 47,426,612 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41142,893,712 - 42,937,792 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11142,951,300 - 42,995,377 (+)NCBI
Celera1141,876,333 - 41,920,495 (+)NCBICelera
Cytogenetic Map11q12NCBI
ST3GAL6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2296,682,241 - 96,748,939 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1396,687,012 - 96,754,585 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0395,833,529 - 95,897,573 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13102,515,153 - 102,579,599 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3102,515,185 - 102,578,843 (+)Ensemblpanpan1.1panPan2
ST3GAL6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1335,572,228 - 5,631,107 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl335,604,628 - 5,630,703 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha335,722,885 - 5,791,963 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0335,710,802 - 5,780,056 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl335,711,625 - 5,766,497 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1335,583,701 - 5,665,729 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0335,646,526 - 5,716,011 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0335,923,257 - 5,992,594 (+)NCBIUU_Cfam_GSD_1.0
St3gal6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602151,328,232 - 151,383,225 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366304,226,115 - 4,280,969 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366304,226,539 - 4,281,064 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ST3GAL6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13160,158,259 - 160,224,819 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113160,158,238 - 160,225,355 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213170,305,811 - 170,328,056 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ST3GAL6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12282,059,441 - 82,126,508 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2282,059,457 - 82,108,137 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604184,429,806 - 84,495,181 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
St3gal6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478911,822,905 - 11,857,471 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478911,782,895 - 11,858,065 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_013515120   ⟹   XP_013370574
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955427397,870 - 450,187 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013370574 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000018143.1
Reference Protein Sequences
RefSeq Acc Id: XP_013370574   ⟸   XM_013515120
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012444 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000018322.1 UniProtKB/TrEMBL
NCBI Gene St3gal6 ENTREZGENE
UniProt A0A8C2VQJ7_CHILA UniProtKB/TrEMBL