Fgf13 (fibroblast growth factor 13) - Rat Genome Database

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Gene: Fgf13 (fibroblast growth factor 13) Chinchilla lanigera
Analyze
Symbol: Fgf13
Name: fibroblast growth factor 13
RGD ID: 8829781
Description: ENCODES a protein that exhibits beta-tubulin binding (ortholog); microtubule binding (ortholog); protein kinase activator activity (ortholog); INVOLVED IN apoptotic process (ortholog); branching morphogenesis of a nerve (ortholog); cerebral cortex cell migration (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Developmental and Epileptic Encephalopathy 90 (ortholog); Neoplasm Metastasis (ortholog); FOUND IN axon (ortholog); cytoplasm (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554896,123,633 - 6,621,692 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554896,122,707 - 6,621,624 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References


Genomics

Comparative Map Data
Fgf13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554896,123,633 - 6,621,692 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554896,122,707 - 6,621,624 (+)NCBIChiLan1.0ChiLan1.0
FGF13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X138,614,727 - 139,205,023 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 EnsemblX138,614,727 - 139,222,777 (-)EnsemblGRCh38hg38GRCh38
GRCh37X137,696,888 - 138,287,185 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X137,541,401 - 137,649,181 (-)NCBINCBI36hg18NCBI36
Build 34X137,439,254 - 137,547,035NCBI
CeleraX138,079,723 - 138,653,021 (-)NCBI
Cytogenetic MapXq26.3-q27.1NCBI
HuRefX126,980,049 - 127,553,217 (-)NCBIHuRef
CHM1_1X137,624,856 - 138,198,651 (-)NCBICHM1_1
T2T-CHM13v2.0X136,925,164 - 137,515,390 (-)NCBI
Fgf13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X58,107,499 - 58,630,932 (-)NCBIGRCm39mm39
GRCm39 EnsemblX58,107,505 - 58,613,431 (-)Ensembl
GRCm38X59,062,139 - 59,585,572 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX59,062,145 - 59,568,071 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X56,315,327 - 56,387,613 (-)NCBIGRCm37mm9NCBIm37
MGSCv36X55,408,934 - 55,481,220 (-)NCBImm8
CeleraX45,524,338 - 45,596,524 (-)NCBICelera
Cytogenetic MapXA6NCBI
cM MapX33.31NCBI
Fgf13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X137,276,498 - 137,800,056 (-)NCBImRatBN7.2
mRatBN7.2 EnsemblX137,276,511 - 137,800,391 (-)Ensembl
Rnor_6.0X142,053,648 - 142,589,274 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX142,053,654 - 142,248,369 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X142,078,572 - 142,607,520 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X144,199,534 - 144,533,485 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1X144,272,969 - 144,606,918 (-)NCBI
CeleraX133,376,309 - 133,487,079 (-)NCBICelera
Cytogenetic MapXq36NCBI
FGF13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X138,023,010 - 138,610,952 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX138,023,016 - 138,103,217 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X127,764,648 - 128,353,928 (-)NCBIMhudiblu_PPA_v0panPan3
FGF13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X108,658,113 - 109,156,096 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX108,658,941 - 109,156,594 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX94,485,065 - 95,008,516 (-)NCBI
ROS_Cfam_1.0X110,643,849 - 111,167,345 (-)NCBI
UMICH_Zoey_3.1X107,778,374 - 108,301,828 (-)NCBI
UNSW_CanFamBas_1.0X109,963,120 - 110,485,873 (-)NCBI
UU_Cfam_GSD_1.0X109,612,364 - 110,135,626 (-)NCBI
Fgf13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X106,703,626 - 107,193,786 (-)NCBI
SpeTri2.0NW_0049365138,419,588 - 8,911,010 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FGF13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX113,460,191 - 113,932,715 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X113,460,191 - 113,955,691 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X129,613,586 - 129,689,377 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FGF13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X113,683,688 - 114,256,728 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 EnsemblX113,684,967 - 113,906,176 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606551,381,406 - 51,958,349 (-)NCBIVero_WHO_p1.0
Fgf13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248087,578,286 - 8,091,811 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248087,577,422 - 8,091,216 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000002485   ⟹   ENSCLAP00000002434
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554896,123,633 - 6,548,823 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000002486   ⟹   ENSCLAP00000002435
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554896,421,780 - 6,621,692 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000002487   ⟹   ENSCLAP00000002436
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554896,509,345 - 6,620,361 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000002488   ⟹   ENSCLAP00000002437
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554896,545,645 - 6,621,692 (+)Ensembl
RefSeq Acc Id: XM_005404571   ⟹   XP_005404628
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554896,122,707 - 6,621,624 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005404572   ⟹   XP_005404629
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554896,545,645 - 6,621,624 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005404573   ⟹   XP_005404630
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554896,122,709 - 6,621,624 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013504503   ⟹   XP_013359957
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554896,122,707 - 6,621,624 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005404628 (Get FASTA)   NCBI Sequence Viewer  
  XP_005404629 (Get FASTA)   NCBI Sequence Viewer  
  XP_005404630 (Get FASTA)   NCBI Sequence Viewer  
  XP_013359957 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005404628   ⟸   XM_005404571
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005404630   ⟸   XM_005404573
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005404629   ⟸   XM_005404572
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013359957   ⟸   XM_013504503
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCLAP00000002435   ⟸   ENSCLAT00000002486
RefSeq Acc Id: ENSCLAP00000002436   ⟸   ENSCLAT00000002487
RefSeq Acc Id: ENSCLAP00000002434   ⟸   ENSCLAT00000002485
RefSeq Acc Id: ENSCLAP00000002437   ⟸   ENSCLAT00000002488


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000001764 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000002434 UniProtKB/TrEMBL
  ENSCLAP00000002435 ENTREZGENE, UniProtKB/TrEMBL
  ENSCLAP00000002436 ENTREZGENE, UniProtKB/TrEMBL
  ENSCLAP00000002437 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000002485 UniProtKB/TrEMBL
  ENSCLAT00000002486 ENTREZGENE, UniProtKB/TrEMBL
  ENSCLAT00000002487 ENTREZGENE, UniProtKB/TrEMBL
  ENSCLAT00000002488 ENTREZGENE, UniProtKB/TrEMBL
NCBI Gene Fgf13 ENTREZGENE
UniProt A0A8C2ULR8_CHILA UniProtKB/TrEMBL
  A0A8C2UML3_CHILA UniProtKB/TrEMBL
  A0A8C2USB0_CHILA UniProtKB/TrEMBL
  A0A8C2YJ45_CHILA UniProtKB/TrEMBL