Fgf4 (fibroblast growth factor 4) - Rat Genome Database

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Pathways
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Gene: Fgf4 (fibroblast growth factor 4) Chinchilla lanigera
Analyze
Symbol: Fgf4
Name: fibroblast growth factor 4
RGD ID: 8828984
Description: INVOLVED IN apoptotic process (ortholog); apoptotic process involved in morphogenesis (ortholog); cartilage condensation (ortholog); PARTICIPATES IN fibroblast growth factor signaling pathway; ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); Breast Neoplasms (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542216,362,418 - 16,364,126 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Fgf4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542216,362,418 - 16,364,126 (+)NCBIChiLan1.0ChiLan1.0
FGF4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381169,771,022 - 69,775,341 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1169,771,022 - 69,775,341 (-)EnsemblGRCh38hg38GRCh38
GRCh371169,585,790 - 69,590,109 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361169,296,978 - 69,299,352 (-)NCBINCBI36Build 36hg18NCBI36
Build 341169,296,977 - 69,299,352NCBI
Celera1166,884,811 - 66,887,185 (-)NCBICelera
Cytogenetic Map11q13.3NCBI
HuRef1165,880,131 - 65,882,505 (-)NCBIHuRef
CHM1_11169,470,729 - 69,473,103 (-)NCBICHM1_1
T2T-CHM13v2.01169,787,944 - 69,792,263 (-)NCBIT2T-CHM13v2.0
Fgf4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397144,415,123 - 144,418,982 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7144,401,104 - 144,418,980 (+)EnsemblGRCm39 Ensembl
GRCm387144,861,386 - 144,865,245 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7144,847,367 - 144,865,243 (+)EnsemblGRCm38mm10GRCm38
MGSCv377152,047,291 - 152,051,148 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367144,670,776 - 144,674,633 (+)NCBIMGSCv36mm8
Celera7144,626,624 - 144,630,481 (+)NCBICelera
Cytogenetic Map7F5NCBI
cM Map788.88NCBI
Fgf4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81209,453,229 - 209,457,085 (+)NCBIGRCr8
mRatBN7.21200,023,937 - 200,027,793 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1200,024,056 - 200,025,466 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1208,405,105 - 208,408,963 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01215,491,358 - 215,495,214 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01208,165,562 - 208,169,418 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01218,024,537 - 218,029,539 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1218,025,810 - 218,027,220 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01224,895,162 - 224,896,687 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41205,292,272 - 205,293,705 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11205,445,724 - 205,447,158 (+)NCBI
Celera1197,582,129 - 197,583,539 (+)NCBICelera
Cytogenetic Map1q42NCBI
FGF4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2970,736,483 - 70,740,546 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11171,779,631 - 71,783,694 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01164,866,649 - 64,871,031 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11168,158,485 - 68,196,616 (-)NCBIpanpan1.1PanPan1.1panPan2
FGF4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11848,413,480 - 48,417,494 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1848,413,187 - 48,416,977 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1847,023,493 - 47,027,360 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01849,090,454 - 49,093,840 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1849,090,383 - 49,093,914 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11848,537,232 - 48,541,095 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01848,123,673 - 48,127,013 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01848,869,443 - 48,873,311 (+)NCBIUU_Cfam_GSD_1.0
Fgf4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049474,451,742 - 4,453,375 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936599894,091 - 895,676 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FGF4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl23,526,914 - 3,529,874 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.123,527,113 - 3,529,011 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.222,004,484 - 2,006,245 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FGF4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.114,786,296 - 4,791,441 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl14,789,203 - 4,791,036 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038102,062,579 - 102,067,196 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fgf4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476717,381,791 - 17,383,468 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476717,381,387 - 17,385,698 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005384960   ⟹   XP_005385017
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542216,362,418 - 16,364,126 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005385017 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000021697
  ENSCLAP00000021697.1
Reference Protein Sequences
RefSeq Acc Id: XP_005385017   ⟸   XM_005384960
- UniProtKB: A0A8C2W1N2 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000014848 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000021900 ENTREZGENE
  ENSCLAT00000021900.1 UniProtKB/TrEMBL
Gene3D-CATH 2.80.10.50 UniProtKB/TrEMBL
InterPro Fibroblast_GF_fam UniProtKB/TrEMBL
  IL1/FGF UniProtKB/TrEMBL
NCBI Gene Fgf4 ENTREZGENE
PANTHER PTHR11486 UniProtKB/TrEMBL
  PTHR11486:SF31 UniProtKB/TrEMBL
Pfam FGF UniProtKB/TrEMBL
PRINTS HBGFFGF UniProtKB/TrEMBL
  IL1HBGF UniProtKB/TrEMBL
PROSITE HBGF_FGF UniProtKB/TrEMBL
SMART FGF UniProtKB/TrEMBL
Superfamily-SCOP SSF50353 UniProtKB/TrEMBL
UniProt A0A8C2W1N2 ENTREZGENE, UniProtKB/TrEMBL