Stx1a (syntaxin 1A) - Rat Genome Database
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Gene: Stx1a (syntaxin 1A) Chinchilla lanigera
Analyze
Symbol: Stx1a
Name: syntaxin 1A
RGD ID: 8828511
Description: ENCODES a protein that exhibits ATP-dependent protein binding (ortholog); calcium channel inhibitor activity (ortholog); calcium-dependent protein binding (ortholog); INVOLVED IN calcium-ion regulated exocytosis (ortholog); hormone secretion (ortholog); insulin secretion (ortholog); PARTICIPATES IN insulin secretion pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); Creutzfeldt-Jakob disease (ortholog); FOUND IN acrosomal vesicle (ortholog); actomyosin (ortholog); axon (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: syntaxin 1A (brain); syntaxin-1A
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545614,030,226 - 14,046,456 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545614,030,233 - 14,046,456 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Stx1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545614,030,226 - 14,046,456 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545614,030,233 - 14,046,456 (+)NCBIChiLan1.0ChiLan1.0
STX1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl773,699,206 - 73,719,672 (-)EnsemblGRCh38hg38GRCh38
GRCh38773,699,210 - 73,719,673 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37773,113,535 - 73,134,032 (-)NCBIGRCh37GRCh37hg19GRCh37
GRCh37773,113,540 - 73,133,999 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36772,751,476 - 72,771,924 (-)NCBINCBI36hg18NCBI36
Build 34772,558,190 - 72,578,613NCBI
Celera768,591,739 - 68,612,223 (-)NCBI
Cytogenetic Map7q11.23NCBI
HuRef768,995,950 - 69,016,432 (-)NCBIHuRef
CHM1_1773,259,272 - 73,279,754 (-)NCBICHM1_1
CRA_TCAGchr7v2772,446,607 - 72,467,089 (-)NCBI
Stx1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395135,051,473 - 135,079,954 (+)NCBIGRCm39mm39
GRCm385135,023,482 - 135,051,100 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5135,023,482 - 135,051,100 (+)EnsemblGRCm38mm10GRCm38
MGSCv375135,499,442 - 135,526,969 (+)NCBIGRCm37mm9NCBIm37
MGSCv365135,308,199 - 135,335,726 (+)NCBImm8
Celera5132,033,901 - 132,061,428 (+)NCBICelera
Cytogenetic Map5G2NCBI
Stx1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21221,641,971 - 21,670,022 (-)NCBI
Rnor_6.0 Ensembl1224,682,041 - 24,710,019 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01224,682,050 - 24,710,002 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01226,682,320 - 26,710,272 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41222,737,112 - 22,765,064 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1223,405,260 - 23,432,900 (-)NCBICelera
Cytogenetic Map12q12NCBI
STX1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1780,852,495 - 80,871,635 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl780,852,495 - 80,862,255 (-)Ensemblpanpan1.1panPan2
STX1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl66,574,631 - 6,581,833 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.166,574,616 - 6,583,002 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Stx1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365432,909,560 - 2,918,175 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STX1A
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1289,347,495 - 9,367,948 (+)NCBI
ChlSab1.1 Ensembl289,347,532 - 9,368,585 (+)Ensembl
Stx1a
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474014,104,033 - 14,120,133 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000008081   ⟹   ENSCLAP00000007961
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495545614,030,226 - 14,046,456 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000008082   ⟹   ENSCLAP00000007962
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495545614,037,004 - 14,045,431 (+)Ensembl
RefSeq Acc Id: XM_005396766   ⟹   XP_005396823
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545614,030,233 - 14,046,456 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005396768   ⟹   XP_005396825
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545614,030,233 - 14,045,038 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005396769   ⟹   XP_005396826
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545614,030,233 - 14,045,135 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005396823 (Get FASTA)   NCBI Sequence Viewer  
  XP_005396825 (Get FASTA)   NCBI Sequence Viewer  
  XP_005396826 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005396823   ⟸   XM_005396766
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005396826   ⟸   XM_005396769
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005396825   ⟸   XM_005396768
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000007961   ⟸   ENSCLAT00000008081
RefSeq Acc Id: ENSCLAP00000007962   ⟸   ENSCLAT00000008082


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000005586 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000007961 ENTREZGENE
Ensembl Transcript ENSCLAT00000008081 ENTREZGENE
NCBI Gene Stx1a ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Stx1a  syntaxin 1A    syntaxin 1A (brain)  Symbol and/or name change 5135510 APPROVED