Slc19a1 (solute carrier family 19 member 1) - Rat Genome Database

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Gene: Slc19a1 (solute carrier family 19 member 1) Chinchilla lanigera
Analyze
Symbol: Slc19a1
Name: solute carrier family 19 member 1
RGD ID: 8828174
Description: ENCODES a protein that exhibits 2',3'-cyclic GMP-AMP binding (ortholog); cyclic-GMP-AMP transmembrane transporter activity (ortholog); folate:anion antiporter activity (ortholog); INVOLVED IN cyclic-GMP-AMP transmembrane import across plasma membrane (ortholog); female pregnancy (ortholog); folate import across plasma membrane (ortholog); PARTICIPATES IN folate cycle metabolic pathway; folate metabolic pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); adenoma (ortholog); angle-closure glaucoma (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); brush border membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: folate transporter 1; solute carrier family 19 (folate transporter), member 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540742,132,165 - 42,141,992 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540742,132,216 - 42,154,252 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Slc19a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540742,132,165 - 42,141,992 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540742,132,216 - 42,154,252 (-)NCBIChiLan1.0ChiLan1.0
SLC19A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2145,493,572 - 45,573,365 (-)EnsemblGRCh38hg38GRCh38
GRCh382145,502,517 - 45,563,140 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372146,932,461 - 46,982,939 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362145,759,057 - 45,786,779 (-)NCBINCBI36hg18NCBI36
Build 342145,759,056 - 45,786,779NCBI
Celera2132,045,498 - 32,073,224 (-)NCBI
Cytogenetic Map21q22.3NCBI
HuRef2132,311,090 - 32,338,803 (-)NCBIHuRef
CHM1_12146,495,459 - 46,523,222 (-)NCBICHM1_1
Slc19a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391076,868,103 - 76,886,266 (+)NCBIGRCm39mm39
GRCm39 Ensembl1076,868,075 - 76,896,836 (+)Ensembl
GRCm381077,032,269 - 77,050,432 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1077,032,241 - 77,061,002 (+)EnsemblGRCm38mm10GRCm38
MGSCv371076,496,004 - 76,513,171 (+)NCBIGRCm37mm9NCBIm37
MGSCv361076,476,975 - 76,494,142 (+)NCBImm8
Celera1078,077,259 - 78,094,426 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
Slc19a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22011,584,410 - 11,602,429 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl2011,584,411 - 11,601,972 (-)Ensembl
Rnor_6.02012,334,675 - 12,354,517 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2012,334,676 - 12,352,377 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02014,497,058 - 14,515,221 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42011,984,283 - 12,001,865 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12011,984,510 - 12,001,518 (-)NCBI
Celera2013,083,139 - 13,100,721 (-)NCBICelera
Cytogenetic Map20p12NCBI
SLC19A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12145,108,537 - 45,155,049 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2145,090,595 - 45,134,752 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02131,836,774 - 31,883,829 (-)NCBIMhudiblu_PPA_v0panPan3
SLC19A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13138,958,332 - 38,971,091 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3138,967,013 - 38,971,094 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3138,186,973 - 38,207,074 (-)NCBI
ROS_Cfam_1.03138,595,425 - 38,615,689 (-)NCBI
UMICH_Zoey_3.13138,459,144 - 38,479,394 (-)NCBI
UNSW_CanFamBas_1.03138,418,853 - 38,439,175 (-)NCBI
UU_Cfam_GSD_1.03138,937,728 - 38,958,024 (-)NCBI
Slc19a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497138,283,370 - 38,301,406 (-)NCBI
SpeTri2.0NW_004936778823,376 - 846,843 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC19A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13207,986,098 - 208,007,675 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113207,986,094 - 208,007,855 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213218,089,574 - 218,114,847 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC19A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1289,188,171 - 89,232,081 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl289,188,733 - 89,209,281 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605417,449,163 - 17,496,448 (-)NCBIVero_WHO_p1.0
Slc19a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474530,793,114 - 30,811,944 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005375919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005375920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013505554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013505559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013505567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013505573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013505575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013505579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013505583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013505590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013505595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013505600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013505606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013505612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013505619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013505628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013505630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013505636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013505639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013505642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01007885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBBH01088077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCLAT00000008320   ⟹   ENSCLAP00000008194
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540742,132,165 - 42,141,992 (-)Ensembl
RefSeq Acc Id: XM_005375919   ⟹   XP_005375976
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540742,132,216 - 42,148,644 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005375920   ⟹   XP_005375977
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540742,132,216 - 42,147,970 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013505554   ⟹   XP_013361008
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540742,132,216 - 42,154,252 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013505559   ⟹   XP_013361013
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540742,132,216 - 42,147,721 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013505567   ⟹   XP_013361021
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540742,132,216 - 42,147,721 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013505573   ⟹   XP_013361027
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540742,132,216 - 42,147,721 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013505575   ⟹   XP_013361029
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540742,132,216 - 42,147,721 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013505579   ⟹   XP_013361033
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540742,132,216 - 42,147,721 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013505583   ⟹   XP_013361037
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540742,132,216 - 42,147,721 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013505590   ⟹   XP_013361044
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540742,132,216 - 42,147,722 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013505595   ⟹   XP_013361049
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540742,132,216 - 42,147,721 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013505600   ⟹   XP_013361054
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540742,132,216 - 42,144,827 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013505606   ⟹   XP_013361060
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540742,132,216 - 42,147,720 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013505612   ⟹   XP_013361066
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540742,132,216 - 42,148,874 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013505619   ⟹   XP_013361073
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540742,132,216 - 42,148,302 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013505628   ⟹   XP_013361082
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540742,132,216 - 42,148,315 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013505630   ⟹   XP_013361084
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540742,132,216 - 42,147,722 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013505636   ⟹   XP_013361090
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540742,132,216 - 42,147,742 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013505639   ⟹   XP_013361093
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540742,132,216 - 42,147,687 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013505642   ⟹   XP_013361096
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540742,132,216 - 42,147,687 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005375976   ⟸   XM_005375919
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005375977   ⟸   XM_005375920
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013361008   ⟸   XM_013505554
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013361066   ⟸   XM_013505612
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013361082   ⟸   XM_013505628
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013361073   ⟸   XM_013505619
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013361090   ⟸   XM_013505636
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013361044   ⟸   XM_013505590
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013361084   ⟸   XM_013505630
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013361021   ⟸   XM_013505567
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013361013   ⟸   XM_013505559
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013361027   ⟸   XM_013505573
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013361037   ⟸   XM_013505583
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013361029   ⟸   XM_013505575
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013361033   ⟸   XM_013505579
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013361049   ⟸   XM_013505595
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013361060   ⟸   XM_013505606
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013361096   ⟸   XM_013505642
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013361093   ⟸   XM_013505639
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013361054   ⟸   XM_013505600
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000008194   ⟸   ENSCLAT00000008320


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000005746 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000008194 ENTREZGENE
Ensembl Transcript ENSCLAT00000008320 ENTREZGENE
NCBI Gene Slc19a1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Slc19a1  solute carrier family 19 member 1    solute carrier family 19 (folate transporter), member 1  Symbol and/or name change 5135510 APPROVED