Svil (supervillin) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Svil (supervillin) Chinchilla lanigera
Analyze
Symbol: Svil
Name: supervillin
RGD ID: 8827441
Description: ENCODES a protein that exhibits actin filament binding (ortholog); INVOLVED IN muscle cell differentiation (ortholog); skeletal muscle tissue development (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); genetic disease (ortholog); myofibrillar myopathy 10 (ortholog); FOUND IN actin cytoskeleton (ortholog); cell periphery (ortholog); costamere (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542922,370,458 - 22,464,579 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542922,339,739 - 22,465,471 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Svil
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542922,370,458 - 22,464,579 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542922,339,739 - 22,465,471 (+)NCBIChiLan1.0ChiLan1.0
SVIL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381029,457,338 - 29,736,936 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1029,457,338 - 29,736,959 (-)EnsemblGRCh38hg38GRCh38
GRCh371029,746,267 - 30,025,865 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361029,786,283 - 30,064,736 (-)NCBINCBI36Build 36hg18NCBI36
Build 341029,786,282 - 29,963,907NCBI
Celera1029,511,358 - 29,789,724 (-)NCBICelera
Cytogenetic Map10p11.23NCBI
HuRef1029,465,586 - 29,744,249 (-)NCBIHuRef
CHM1_11029,746,277 - 30,024,634 (-)NCBICHM1_1
T2T-CHM13v2.01029,488,436 - 29,767,980 (-)NCBIT2T-CHM13v2.0
Svil
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39184,920,497 - 5,119,290 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl184,920,540 - 5,119,299 (+)EnsemblGRCm39 Ensembl
GRCm38184,920,467 - 5,119,293 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl184,920,540 - 5,119,299 (+)EnsemblGRCm38mm10GRCm38
MGSCv37185,046,587 - 5,119,291 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36184,920,565 - 5,119,288 (+)NCBIMGSCv36mm8
Celera185,092,122 - 5,164,709 (+)NCBICelera
Cytogenetic Map18A1NCBI
cM Map183.02NCBI
Svil
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81757,343,910 - 57,539,508 (-)NCBIGRCr8
mRatBN7.21752,648,502 - 52,844,114 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1752,648,502 - 52,793,404 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1755,820,848 - 55,938,869 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01759,823,791 - 59,941,814 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01753,982,925 - 54,101,816 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01755,230,298 - 55,425,967 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1755,230,298 - 55,346,279 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01752,915,519 - 53,109,502 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41760,897,631 - 60,898,874 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11760,908,466 - 60,983,517 (-)NCBI
Celera1748,653,106 - 48,767,953 (-)NCBICelera
Cytogenetic Map17q12.1NCBI
LOC100977039
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2842,129,089 - 42,406,690 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11042,123,061 - 42,412,002 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01029,609,492 - 29,886,920 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11029,965,789 - 30,241,150 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1029,965,792 - 30,064,765 (-)Ensemblpanpan1.1panPan2
SVIL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1216,004,160 - 16,234,434 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl216,004,951 - 16,174,218 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha213,491,738 - 13,728,974 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0214,241,118 - 14,472,207 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl214,241,141 - 14,393,547 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1213,679,909 - 13,916,712 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0213,571,334 - 13,802,471 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0213,845,719 - 13,949,060 (-)NCBIUU_Cfam_GSD_1.0
Svil
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093449,841,704 - 9,989,550 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366134,404,711 - 4,542,890 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366134,391,928 - 4,540,125 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SVIL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1041,282,412 - 41,462,764 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11041,176,358 - 41,462,750 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21045,876,765 - 46,002,098 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Svil
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248053,230,291 - 3,320,597 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248053,111,789 - 3,321,459 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005387196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005387198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005387200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013515379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013515380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013515381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013515382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013515383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013515384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013515385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013515386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013515387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013515388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01029025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01029026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01029027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01029028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBBH01090392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCLAT00000025021   ⟹   ENSCLAP00000024781
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542922,370,458 - 22,464,579 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000025022   ⟹   ENSCLAP00000024782
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542922,385,919 - 22,464,579 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000025023   ⟹   ENSCLAP00000024783
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542922,385,919 - 22,464,579 (+)Ensembl
RefSeq Acc Id: XM_005387196   ⟹   XP_005387253
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542922,386,032 - 22,465,471 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005387198   ⟹   XP_005387255
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542922,386,032 - 22,465,471 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005387200   ⟹   XP_005387257
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542922,386,032 - 22,465,471 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013515379   ⟹   XP_013370833
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542922,367,007 - 22,465,471 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013515380   ⟹   XP_013370834
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542922,367,007 - 22,465,471 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013515381   ⟹   XP_013370835
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542922,339,739 - 22,465,471 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013515382   ⟹   XP_013370836
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542922,367,007 - 22,465,471 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013515383   ⟹   XP_013370837
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542922,367,007 - 22,465,471 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013515384   ⟹   XP_013370838
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542922,367,007 - 22,465,471 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013515385   ⟹   XP_013370839
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542922,367,007 - 22,465,471 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013515386   ⟹   XP_013370840
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542922,367,007 - 22,465,471 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013515387   ⟹   XP_013370841
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542922,367,007 - 22,465,471 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013515388   ⟹   XP_013370842
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542922,367,007 - 22,465,471 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005387253   ⟸   XM_005387196
- Peptide Label: isoform X8
- UniProtKB: A0A8C2WAV5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005387255   ⟸   XM_005387198
- Peptide Label: isoform X9
- UniProtKB: A0A8C2W6J9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005387257   ⟸   XM_005387200
- Peptide Label: isoform X13
- UniProtKB: A0A8C2W8I4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013370835   ⟸   XM_013515381
- Peptide Label: isoform X3
- UniProtKB: A0A8C2WAV5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013370833   ⟸   XM_013515379
- Peptide Label: isoform X1
- UniProtKB: A0A8C2WAV5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013370836   ⟸   XM_013515382
- Peptide Label: isoform X4
- UniProtKB: A0A8C2WAV5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013370838   ⟸   XM_013515384
- Peptide Label: isoform X6
- UniProtKB: A0A8C2WAV5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013370834   ⟸   XM_013515380
- Peptide Label: isoform X2
- UniProtKB: A0A8C2WAV5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013370837   ⟸   XM_013515383
- Peptide Label: isoform X5
- UniProtKB: A0A8C2WAV5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013370839   ⟸   XM_013515385
- Peptide Label: isoform X7
- UniProtKB: A0A8C2WAV5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013370840   ⟸   XM_013515386
- Peptide Label: isoform X10
- UniProtKB: A0A8C2W8I4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013370841   ⟸   XM_013515387
- Peptide Label: isoform X11
- UniProtKB: A0A8C2W8I4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013370842   ⟸   XM_013515388
- Peptide Label: isoform X12
- UniProtKB: A0A8C2W8I4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000024782   ⟸   ENSCLAT00000025022
RefSeq Acc Id: ENSCLAP00000024781   ⟸   ENSCLAT00000025021
RefSeq Acc Id: ENSCLAP00000024783   ⟸   ENSCLAT00000025023
Protein Domains
HP


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000017014 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000025021 ENTREZGENE
  ENSCLAT00000025021.1 UniProtKB/TrEMBL
  ENSCLAT00000025022 ENTREZGENE
  ENSCLAT00000025022.1 UniProtKB/TrEMBL
  ENSCLAT00000025023 ENTREZGENE
  ENSCLAT00000025023.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.950.10 UniProtKB/TrEMBL
  3.40.20.10 UniProtKB/TrEMBL
InterPro ADF-H/Gelsolin-like_dom_sf UniProtKB/TrEMBL
  Gelsolin-like_dom UniProtKB/TrEMBL
  Villin/Gelsolin UniProtKB/TrEMBL
  Villin_headpiece UniProtKB/TrEMBL
  Villin_headpiece_dom_sf UniProtKB/TrEMBL
NCBI Gene Svil ENTREZGENE
PANTHER PTHR11977 UniProtKB/TrEMBL
  SUPERVILLIN UniProtKB/TrEMBL
Pfam Gelsolin UniProtKB/TrEMBL
  VHP UniProtKB/TrEMBL
PRINTS GELSOLIN UniProtKB/TrEMBL
PROSITE PS51089 UniProtKB/TrEMBL
SMART GEL UniProtKB/TrEMBL
  VHP UniProtKB/TrEMBL
Superfamily-SCOP Actin depolymerizing proteins UniProtKB/TrEMBL
  SSF47050 UniProtKB/TrEMBL
UniProt A0A8C2W6J9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2W8I4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2WAV5 ENTREZGENE, UniProtKB/TrEMBL