Adck1 (aarF domain containing kinase 1) - Rat Genome Database

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Gene: Adck1 (aarF domain containing kinase 1) Chinchilla lanigera
Analyze
Symbol: Adck1
Name: aarF domain containing kinase 1
RGD ID: 8826759
Description: INVOLVED IN negative regulation of mitochondrial fusion (ortholog); positive regulation of cristae formation (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: uncharacterized aarF domain-containing protein kinase 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554381,638,668 - 1,751,962 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554381,638,673 - 1,760,791 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Adck1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554381,638,668 - 1,751,962 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554381,638,673 - 1,760,791 (+)NCBIChiLan1.0ChiLan1.0
ADCK1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381477,800,109 - 77,935,014 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1477,800,109 - 77,935,014 (+)EnsemblGRCh38hg38GRCh38
GRCh371478,266,452 - 78,401,357 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361477,336,227 - 77,470,047 (+)NCBINCBI36Build 36hg18NCBI36
Build 341477,336,226 - 77,470,047NCBI
Celera1458,304,590 - 58,438,453 (+)NCBICelera
Cytogenetic Map14q24.3NCBI
HuRef1458,432,570 - 58,566,242 (+)NCBIHuRef
CHM1_11478,205,866 - 78,339,895 (+)NCBICHM1_1
T2T-CHM13v2.01472,009,104 - 72,144,049 (+)NCBIT2T-CHM13v2.0
Adck1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391288,327,264 - 88,428,496 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1288,327,324 - 88,428,494 (+)EnsemblGRCm39 Ensembl
GRCm381288,360,494 - 88,461,726 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1288,360,554 - 88,461,724 (+)EnsemblGRCm38mm10GRCm38
MGSCv371289,599,245 - 89,700,162 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361288,874,056 - 88,975,197 (+)NCBIMGSCv36mm8
Celera1289,684,194 - 89,789,768 (+)NCBICelera
Cytogenetic Map12D2- D3NCBI
cM Map1242.55NCBI
Adck1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86113,005,333 - 113,107,960 (+)NCBIGRCr8
mRatBN7.26107,277,170 - 107,377,057 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6107,277,244 - 107,377,055 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6107,447,792 - 107,547,603 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06107,746,614 - 107,846,436 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06107,116,306 - 107,216,119 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06111,640,652 - 111,741,418 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6111,642,411 - 111,740,481 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06120,923,362 - 121,020,830 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46111,872,315 - 111,992,613 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16111,883,788 - 111,995,600 (+)NCBI
Celera6105,091,084 - 105,190,719 (+)NCBICelera
Cytogenetic Map6q31NCBI
ADCK1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21578,887,369 - 79,027,201 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11478,103,891 - 78,243,706 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01458,355,670 - 58,495,032 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11477,556,389 - 77,695,344 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1477,556,389 - 77,695,344 (+)Ensemblpanpan1.1panPan2
ADCK1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1850,512,342 - 50,666,410 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl850,512,261 - 50,656,958 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha850,199,173 - 50,346,730 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0850,746,049 - 50,892,474 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl850,780,215 - 50,927,625 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1850,408,135 - 50,573,880 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0850,431,378 - 50,578,902 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0850,830,024 - 50,977,731 (+)NCBIUU_Cfam_GSD_1.0
Adck1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864025,369,304 - 25,472,845 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364886,592,405 - 6,698,140 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364886,579,461 - 6,699,664 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ADCK1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7100,777,144 - 100,902,948 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17100,777,125 - 100,909,140 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27106,832,993 - 106,903,089 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ADCK1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12455,063,870 - 55,193,475 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2455,080,088 - 55,193,471 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605343,247,543 - 43,375,449 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Adck1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473423,976,811 - 24,116,546 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473423,994,929 - 24,116,551 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000010826   ⟹   ENSCLAP00000010694
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554381,638,668 - 1,751,962 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000010827   ⟹   ENSCLAP00000010695
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554381,646,676 - 1,751,962 (+)Ensembl
RefSeq Acc Id: XM_005390216   ⟹   XP_005390273
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554381,638,673 - 1,760,791 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005390222   ⟹   XP_005390279
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554381,682,828 - 1,760,791 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013517182   ⟹   XP_013372636
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554381,638,673 - 1,760,791 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013517183   ⟹   XP_013372637
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554381,638,673 - 1,760,791 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013517184   ⟹   XP_013372638
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554381,638,673 - 1,760,791 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005390273   ⟸   XM_005390216
- Peptide Label: isoform X1
- UniProtKB: A0A8C2V6E4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005390279   ⟸   XM_005390222
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_013372636   ⟸   XM_013517182
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013372638   ⟸   XM_013517184
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013372637   ⟸   XM_013517183
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSCLAP00000010694   ⟸   ENSCLAT00000010826
RefSeq Acc Id: ENSCLAP00000010695   ⟸   ENSCLAT00000010827
Protein Domains
ABC1 atypical kinase-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007379 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000010826 ENTREZGENE
  ENSCLAT00000010826.1 UniProtKB/TrEMBL
  ENSCLAT00000010827.1 UniProtKB/TrEMBL
Gene3D-CATH Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro ABC1_dom UniProtKB/TrEMBL
  ADCK1_dom UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/TrEMBL
NCBI Gene Adck1 ENTREZGENE
PANTHER AARF DOMAIN-CONTAINING PROTEIN KINASE 1 UniProtKB/TrEMBL
  ABC1 FAMILY PROTEIN UniProtKB/TrEMBL
Pfam ABC1 UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/TrEMBL
UniProt A0A8C2V6E4 ENTREZGENE, UniProtKB/TrEMBL