Rab7b (RAB7B, member RAS oncogene family) - Rat Genome Database

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Gene: Rab7b (RAB7B, member RAS oncogene family) Chinchilla lanigera
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Symbol: Rab7b
Name: RAB7B, member RAS oncogene family
RGD ID: 8825954
Description: INVOLVED IN cellular response to type II interferon (ortholog); late endosome to Golgi transport (ortholog); negative regulation of toll-like receptor 4 signaling pathway (ortholog); ASSOCIATED WITH Acute Coronary Syndrome (ortholog); autistic disorder (ortholog); osteoporosis (ortholog); FOUND IN Golgi apparatus (ortholog); late endosome (ortholog); lysosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ras-related protein Rab-7b
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540641,615,302 - 41,638,151 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540641,615,302 - 41,638,157 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rab7b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540641,615,302 - 41,638,151 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540641,615,302 - 41,638,157 (-)NCBIChiLan1.0ChiLan1.0
RAB7B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381205,976,740 - 206,003,395 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1205,976,740 - 206,003,461 (-)EnsemblGRCh38hg38GRCh38
Celera1179,083,656 - 179,111,173 (-)NCBICelera
Cytogenetic Map1q32.1NCBI
T2T-CHM13v2.01205,240,788 - 205,267,388 (-)NCBIT2T-CHM13v2.0
Rab7b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391131,616,412 - 131,646,288 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1131,616,433 - 131,643,177 (+)EnsemblGRCm39 Ensembl
GRCm381131,688,681 - 131,715,443 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1131,688,695 - 131,715,439 (+)EnsemblGRCm38mm10GRCm38
MGSCv371133,585,272 - 133,610,041 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361133,516,271 - 133,540,610 (+)NCBIMGSCv36mm8
Celera1134,288,561 - 134,315,745 (+)NCBICelera
Cytogenetic Map1E4NCBI
cM Map157.18NCBI
Rab7b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81345,673,396 - 45,699,798 (+)NCBIGRCr8
mRatBN7.21343,121,168 - 43,147,581 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1343,121,226 - 43,147,581 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1345,724,566 - 45,751,219 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01347,012,704 - 47,039,362 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01344,277,285 - 44,303,944 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01348,456,143 - 48,483,714 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1348,455,923 - 48,482,138 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01353,528,328 - 53,554,460 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41344,620,063 - 44,636,864 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1343,459,652 - 43,485,905 (+)NCBICelera
Cytogenetic Map13q13NCBI
RAB7B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2143,366,553 - 43,393,623 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1143,332,079 - 43,359,104 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01181,584,814 - 181,611,831 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11185,868,040 - 185,894,691 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1185,867,145 - 185,894,691 (-)Ensemblpanpan1.1panPan2
RAB7B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1382,333,939 - 2,359,531 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl382,335,535 - 2,359,469 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha382,426,274 - 2,452,097 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0382,331,177 - 2,356,692 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl382,331,172 - 2,356,652 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1382,324,856 - 2,350,846 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0382,716,580 - 2,742,361 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0382,917,536 - 2,943,551 (-)NCBIUU_Cfam_GSD_1.0
Rab7b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934469,264,259 - 69,283,993 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365576,504,509 - 6,519,219 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365576,504,562 - 6,519,219 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB7B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl966,635,638 - 66,666,036 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1966,635,636 - 66,666,034 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2972,916,252 - 72,946,414 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RAB7B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12523,341,090 - 23,367,414 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2523,341,490 - 23,367,398 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605524,038,503 - 24,064,596 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rab7b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248075,307,440 - 5,334,945 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248075,307,361 - 5,334,578 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000019106   ⟹   ENSCLAP00000018921
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540641,615,302 - 41,632,753 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000019107   ⟹   ENSCLAP00000018922
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540641,617,066 - 41,638,151 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000019108   ⟹   ENSCLAP00000018923
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540641,617,066 - 41,632,142 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000019109   ⟹   ENSCLAP00000018924
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540641,617,066 - 41,632,142 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000019110   ⟹   ENSCLAP00000018925
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540641,619,324 - 41,632,142 (-)Ensembl
RefSeq Acc Id: XM_005375379   ⟹   XP_005375436
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540641,615,302 - 41,632,487 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005375380   ⟹   XP_005375437
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540641,615,302 - 41,638,157 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005375437   ⟸   XM_005375380
- UniProtKB: A0A8C2VU68 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005375436   ⟸   XM_005375379
- UniProtKB: A0A8C2VU68 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000018924   ⟸   ENSCLAT00000019109
RefSeq Acc Id: ENSCLAP00000018922   ⟸   ENSCLAT00000019107
RefSeq Acc Id: ENSCLAP00000018923   ⟸   ENSCLAT00000019108
RefSeq Acc Id: ENSCLAP00000018921   ⟸   ENSCLAT00000019106
RefSeq Acc Id: ENSCLAP00000018925   ⟸   ENSCLAT00000019110


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012958 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000019106 ENTREZGENE
  ENSCLAT00000019106.1 UniProtKB/TrEMBL
  ENSCLAT00000019107 ENTREZGENE
  ENSCLAT00000019107.1 UniProtKB/TrEMBL
  ENSCLAT00000019108.1 UniProtKB/TrEMBL
  ENSCLAT00000019109.1 UniProtKB/TrEMBL
  ENSCLAT00000019110.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/TrEMBL
  Small_GTPase UniProtKB/TrEMBL
NCBI Gene LOC102015373 ENTREZGENE
PANTHER RAB FAMILY UniProtKB/TrEMBL
  RAS-RELATED PROTEIN RAB-7B UniProtKB/TrEMBL
Pfam Ras UniProtKB/TrEMBL
PRINTS RASTRNSFRMNG UniProtKB/TrEMBL
PROSITE ARF UniProtKB/TrEMBL
  RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
SMART RAB UniProtKB/TrEMBL
  RAN UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8C2VSG1_CHILA UniProtKB/TrEMBL
  A0A8C2VU68 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VVB2_CHILA UniProtKB/TrEMBL
  A0A8C2VX46_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Rab7b  RAB7B, member RAS oncogene family  LOC102015373  ras-related protein Rab-7b-like  Symbol and/or name change 5135510 APPROVED