Egr3 (early growth response 3) - Rat Genome Database

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Gene: Egr3 (early growth response 3) Chinchilla lanigera
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Symbol: Egr3
Name: early growth response 3
RGD ID: 8825814
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN cell migration involved in sprouting angiogenesis (ortholog); cellular response to fibroblast growth factor stimulus (ortholog); cellular response to vascular endothelial growth factor stimulus (ortholog); ASSOCIATED WITH Ataxia (ortholog); COVID-19 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: early growth response protein 3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540346,105,447 - 46,108,149 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540346,105,447 - 46,108,149 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References


Genomics

Comparative Map Data
Egr3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540346,105,447 - 46,108,149 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540346,105,447 - 46,108,149 (-)NCBIChiLan1.0ChiLan1.0
EGR3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl822,687,659 - 22,693,480 (-)EnsemblGRCh38hg38GRCh38
GRCh38822,687,659 - 22,693,480 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37822,545,172 - 22,550,993 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36822,601,119 - 22,606,760 (-)NCBINCBI36hg18NCBI36
Build 34822,601,118 - 22,606,760NCBI
Celera821,507,165 - 21,512,936 (-)NCBI
Cytogenetic Map8p21.3NCBI
HuRef821,088,681 - 21,094,160 (-)NCBIHuRef
CHM1_1822,747,408 - 22,752,963 (-)NCBICHM1_1
Egr3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391470,314,766 - 70,320,062 (+)NCBIGRCm39mm39
GRCm39 Ensembl1470,314,652 - 70,320,063 (+)Ensembl
GRCm381470,077,317 - 70,082,613 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1470,077,203 - 70,082,614 (+)EnsemblGRCm38mm10GRCm38
MGSCv371470,477,252 - 70,479,964 (+)NCBIGRCm37mm9NCBIm37
MGSCv361468,812,525 - 68,815,237 (+)NCBImm8
Celera1467,617,884 - 67,620,596 (+)NCBICelera
Cytogenetic Map14D2NCBI
Egr3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21545,150,335 - 45,156,052 (+)NCBI
Rnor_6.0 Ensembl1551,756,736 - 51,760,722 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01551,756,683 - 51,762,080 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01555,482,581 - 55,485,350 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41550,477,453 - 50,479,909 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11550,493,232 - 50,495,689 (+)NCBI
Celera1544,830,934 - 44,833,390 (+)NCBICelera
Cytogenetic Map15p11NCBI
EGR3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1818,877,396 - 18,882,874 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl818,877,396 - 18,882,874 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0821,937,516 - 21,943,646 (-)NCBIMhudiblu_PPA_v0panPan3
EGR3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12534,591,691 - 34,597,144 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2534,591,863 - 34,594,346 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2535,181,838 - 35,187,272 (+)NCBI
ROS_Cfam_1.02534,801,578 - 34,807,024 (+)NCBI
UMICH_Zoey_3.12534,747,844 - 34,753,287 (+)NCBI
UNSW_CanFamBas_1.02534,602,152 - 34,607,596 (+)NCBI
UU_Cfam_GSD_1.02534,757,654 - 34,763,098 (+)NCBI
EGR3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl146,945,936 - 6,948,684 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1146,943,184 - 6,948,507 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2147,423,458 - 7,429,476 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EGR3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1820,767,219 - 20,772,838 (-)NCBI
ChlSab1.1 Ensembl820,767,224 - 20,772,682 (-)Ensembl
Vero_WHO_p1.0NW_02366605221,453,195 - 21,459,987 (+)NCBI
Egr3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475818,180,787 - 18,186,148 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000024075   ⟹   ENSCLAP00000023849
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540346,105,447 - 46,108,149 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000024076   ⟹   ENSCLAP00000023850
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540346,105,539 - 46,108,149 (-)Ensembl
RefSeq Acc Id: XM_005373688   ⟹   XP_005373745
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540346,105,447 - 46,108,149 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005373745 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005373745   ⟸   XM_005373688
- Sequence:
RefSeq Acc Id: ENSCLAP00000023849   ⟸   ENSCLAT00000024075
RefSeq Acc Id: ENSCLAP00000023850   ⟸   ENSCLAT00000024076


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000016373 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000023849 ENTREZGENE
Ensembl Transcript ENSCLAT00000024075 ENTREZGENE
NCBI Gene Egr3 ENTREZGENE