Radil (Rap associating with DIL domain) - Rat Genome Database

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Gene: Radil (Rap associating with DIL domain) Chinchilla lanigera
Analyze
Symbol: Radil
Name: Rap associating with DIL domain
RGD ID: 8825383
Description: INVOLVED IN substrate adhesion-dependent cell spreading (ortholog); ASSOCIATED WITH Baraitser-Winter syndrome 1 (ortholog); megacolon (ortholog); FOUND IN microtubule (ortholog); protein-containing complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Ras association and DIL domains
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546010,931,901 - 10,994,178 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546010,906,944 - 10,990,369 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Radil
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546010,931,901 - 10,994,178 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546010,906,944 - 10,990,369 (+)NCBIChiLan1.0ChiLan1.0
RADIL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3874,797,055 - 4,883,716 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl74,797,055 - 4,883,716 (-)EnsemblGRCh38hg38GRCh38
GRCh3774,836,686 - 4,923,347 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3674,805,266 - 4,889,861 (-)NCBINCBI36Build 36hg18NCBI36
Celera74,798,391 - 4,882,417 (-)NCBICelera
Cytogenetic Map7p22.1NCBI
HuRef74,755,550 - 4,838,928 (-)NCBIHuRef
CHM1_174,838,485 - 4,923,073 (-)NCBICHM1_1
T2T-CHM13v2.074,914,262 - 5,000,912 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v274,885,095 - 4,969,690 (-)NCBI
Radil
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395142,470,594 - 142,536,873 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5142,470,594 - 142,536,853 (-)EnsemblGRCm39 Ensembl
GRCm385142,483,795 - 142,551,098 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5142,484,839 - 142,551,098 (-)EnsemblGRCm38mm10GRCm38
MGSCv375142,960,795 - 143,027,031 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365142,737,315 - 142,803,551 (-)NCBIMGSCv36mm8
Celera5139,539,520 - 139,606,082 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map581.53NCBI
Radil
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81217,137,872 - 17,202,021 (+)NCBIGRCr8
mRatBN7.21212,024,395 - 12,088,540 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1212,024,395 - 12,088,540 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1212,826,887 - 12,890,790 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01213,450,118 - 13,514,021 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01212,481,238 - 12,545,147 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01214,092,541 - 14,156,704 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1214,092,541 - 14,156,704 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01216,120,532 - 16,185,309 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41212,420,877 - 12,485,651 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11212,450,944 - 12,515,270 (+)NCBI
Celera1213,807,057 - 13,871,056 (+)NCBICelera
Cytogenetic Map12p11NCBI
RADIL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v269,765,330 - 9,849,949 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1758,090,038 - 58,174,653 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v075,051,784 - 5,136,345 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.175,092,131 - 5,130,716 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl75,092,131 - 5,130,716 (-)Ensemblpanpan1.1panPan2
LOC479761
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1612,718,243 - 12,845,186 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl612,717,693 - 12,845,196 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha614,188,679 - 14,316,046 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0612,854,072 - 12,981,532 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl612,853,662 - 12,981,542 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1612,664,990 - 12,792,207 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0612,597,907 - 12,725,235 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0612,900,295 - 13,001,428 (+)NCBIUU_Cfam_GSD_1.0
Radil
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344141,029,892 - 141,113,057 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367651,051,351 - 1,104,618 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367651,050,471 - 1,104,117 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RADIL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl33,641,112 - 3,716,141 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.133,642,294 - 3,716,139 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.234,292,918 - 4,366,769 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RADIL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12816,765,646 - 16,846,934 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2816,771,061 - 16,846,664 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660905,072,668 - 5,154,585 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000007935   ⟹   ENSCLAP00000007815
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495546010,931,901 - 10,990,108 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000007936   ⟹   ENSCLAP00000007816
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495546010,932,685 - 10,994,178 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000007937   ⟹   ENSCLAP00000007817
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495546010,932,749 - 10,990,108 (+)Ensembl
RefSeq Acc Id: XM_005397849   ⟹   XP_005397906
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495546010,964,508 - 10,990,369 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013521246   ⟹   XP_013376700
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495546010,906,944 - 10,990,369 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005397906 (Get FASTA)   NCBI Sequence Viewer  
  XP_013376700 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000007815.1
  ENSCLAP00000007816
  ENSCLAP00000007816.1
  ENSCLAP00000007817.1
RefSeq Acc Id: XP_005397906   ⟸   XM_005397849
- Peptide Label: isoform X2
- UniProtKB: A0A8C2V4Y5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013376700   ⟸   XM_013521246
- Peptide Label: isoform X1
- UniProtKB: A0A8C2V2I1 (UniProtKB/TrEMBL),   A0A8C2V4Y5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000007817   ⟸   ENSCLAT00000007937
Ensembl Acc Id: ENSCLAP00000007815   ⟸   ENSCLAT00000007935
Ensembl Acc Id: ENSCLAP00000007816   ⟸   ENSCLAT00000007936
Protein Domains
Dilute   PDZ   Ras-associating


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000005480 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000007935.1 UniProtKB/TrEMBL
  ENSCLAT00000007936 ENTREZGENE
  ENSCLAT00000007936.1 UniProtKB/TrEMBL
  ENSCLAT00000007937.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.42.10 UniProtKB/TrEMBL
  2.60.200.20 UniProtKB/TrEMBL
InterPro CBD_Rasip1/Radil UniProtKB/TrEMBL
  Dilute_dom UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PDZ_sf UniProtKB/TrEMBL
  RA_dom UniProtKB/TrEMBL
  SMAD_FHA_dom_sf UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
  Vascular_dev_regulator UniProtKB/TrEMBL
NCBI Gene Radil ENTREZGENE
PANTHER DILUTE DOMAIN-CONTAINING PROTEIN YPR089W UniProtKB/TrEMBL
  RAS-ASSOCIATING AND DILUTE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam DIL UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PF00788 UniProtKB/TrEMBL
PROSITE DILUTE UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PS50200 UniProtKB/TrEMBL
SMART DIL UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  SM00314 UniProtKB/TrEMBL
Superfamily-SCOP SSF49879 UniProtKB/TrEMBL
  SSF50156 UniProtKB/TrEMBL
  SSF54236 UniProtKB/TrEMBL
UniProt A0A8C2UZX5_CHILA UniProtKB/TrEMBL
  A0A8C2V2I1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2V4Y5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Radil  Rap associating with DIL domain    Ras association and DIL domains  Symbol and/or name change 5135510 APPROVED