Cacng3 (calcium voltage-gated channel auxiliary subunit gamma 3) - Rat Genome Database

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Gene: Cacng3 (calcium voltage-gated channel auxiliary subunit gamma 3) Chinchilla lanigera
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Symbol: Cacng3
Name: calcium voltage-gated channel auxiliary subunit gamma 3
RGD ID: 8825018
Description: ENCODES a protein that exhibits ionotropic glutamate receptor binding (ortholog); PDZ domain binding (ortholog); INVOLVED IN neurotransmitter receptor localization to postsynaptic specialization membrane (ortholog); positive regulation of AMPA receptor activity (ortholog); protein localization (ortholog); ASSOCIATED WITH childhood absence epilepsy (ortholog); macular degeneration (ortholog); FOUND IN AMPA glutamate receptor complex (ortholog); dendrite (ortholog); excitatory synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: calcium channel, voltage-dependent, gamma subunit 3; voltage-dependent calcium channel gamma-3 subunit
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554932,742,096 - 2,841,403 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554932,742,096 - 2,841,353 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References


Genomics

Comparative Map Data
Cacng3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554932,742,096 - 2,841,403 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554932,742,096 - 2,841,353 (+)NCBIChiLan1.0ChiLan1.0
CACNG3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1624,256,335 - 24,362,412 (+)EnsemblGRCh38hg38GRCh38
GRCh381624,256,335 - 24,362,412 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371624,267,656 - 24,373,733 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361624,174,377 - 24,281,238 (+)NCBINCBI36hg18NCBI36
Build 341624,174,376 - 24,281,238NCBI
Celera1623,044,814 - 23,151,626 (+)NCBI
Cytogenetic Map16p12.1NCBI
HuRef1622,357,514 - 22,464,192 (+)NCBIHuRef
CHM1_11625,279,898 - 25,387,338 (+)NCBICHM1_1
Cacng3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397122,270,967 - 122,368,616 (+)NCBIGRCm39mm39
GRCm39 Ensembl7122,269,715 - 122,368,616 (+)Ensembl
GRCm387122,671,744 - 122,769,393 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7122,670,492 - 122,769,393 (+)EnsemblGRCm38mm10GRCm38
MGSCv377129,815,258 - 129,912,907 (+)NCBIGRCm37mm9NCBIm37
MGSCv367122,462,922 - 122,559,994 (+)NCBImm8
Celera7122,557,841 - 122,658,275 (+)NCBICelera
Cytogenetic Map7F2NCBI
Cacng3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21177,201,990 - 177,296,473 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1177,201,288 - 177,297,024 (+)Ensembl
Rnor_6.01192,613,766 - 192,708,371 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1192,613,372 - 192,709,078 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01199,676,988 - 199,771,889 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41181,498,716 - 181,594,090 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11181,638,630 - 181,734,005 (+)NCBI
Celera1174,909,742 - 175,002,485 (+)NCBICelera
Cytogenetic Map1q36NCBI
CACNG3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11624,501,881 - 24,608,921 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1624,501,881 - 24,608,921 (+)Ensemblpanpan1.1panPan2
CACNG3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1621,626,977 - 21,712,331 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl621,627,547 - 21,711,635 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha623,188,831 - 23,274,205 (-)NCBI
ROS_Cfam_1.0621,764,445 - 21,849,816 (-)NCBI
UMICH_Zoey_3.1621,569,695 - 21,655,198 (-)NCBI
UNSW_CanFamBas_1.0621,472,243 - 21,557,090 (-)NCBI
UU_Cfam_GSD_1.0621,866,262 - 21,951,817 (-)NCBI
Cacng3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344120,664,522 - 120,743,045 (+)NCBI
SpeTri2.0NW_0049365018,762,386 - 8,840,123 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CACNG3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl321,855,852 - 21,961,198 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1321,855,847 - 21,961,191 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2322,759,942 - 22,865,619 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CACNG3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1521,975,706 - 22,081,428 (+)NCBI
ChlSab1.1 Ensembl521,976,428 - 22,081,547 (+)Ensembl
Vero_WHO_p1.0NW_0236660687,691,896 - 7,799,654 (-)NCBI
Cacng3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247829,319,318 - 9,408,620 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000016835   ⟹   ENSCLAP00000016671
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554932,742,096 - 2,841,403 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000016836   ⟹   ENSCLAP00000016672
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554932,742,942 - 2,840,497 (+)Ensembl
RefSeq Acc Id: XM_005405105   ⟹   XP_005405162
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554932,742,096 - 2,841,353 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005405162 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005405162   ⟸   XM_005405105
- Sequence:
RefSeq Acc Id: ENSCLAP00000016671   ⟸   ENSCLAT00000016835
RefSeq Acc Id: ENSCLAP00000016672   ⟸   ENSCLAT00000016836


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011450 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000016671 ENTREZGENE
Ensembl Transcript ENSCLAT00000016835 ENTREZGENE
NCBI Gene Cacng3 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Cacng3  calcium voltage-gated channel auxiliary subunit gamma 3    calcium channel, voltage-dependent, gamma subunit 3  Symbol and/or name change 5135510 APPROVED