Dffa (DNA fragmentation factor subunit alpha) - Rat Genome Database

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Gene: Dffa (DNA fragmentation factor subunit alpha) Chinchilla lanigera
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Symbol: Dffa
Name: DNA fragmentation factor subunit alpha
RGD ID: 8824295
Description: ENCODES a protein that exhibits deoxyribonuclease inhibitor activity (ortholog); protein domain specific binding (ortholog); protein folding chaperone (ortholog); INVOLVED IN chaperone-mediated protein folding (ortholog); negative regulation of apoptotic DNA fragmentation (ortholog); negative regulation of deoxyribonuclease activity (ortholog); ASSOCIATED WITH immunodeficiency 14 (ortholog); FOUND IN chromatin (ortholog); cytosol (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: DNA fragmentation factor, 45kDa, alpha polypeptide; LOW QUALITY PROTEIN: DNA fragmentation factor subunit alpha
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554863,273,712 - 3,274,510 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References


Genomics

Comparative Map Data
Dffa
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554863,273,712 - 3,274,510 (+)NCBIChiLan1.0ChiLan1.0
DFFA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl110,456,522 - 10,472,529 (-)EnsemblGRCh38hg38GRCh38
GRCh38110,456,522 - 10,472,529 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37110,516,579 - 10,532,586 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36110,443,175 - 10,455,200 (-)NCBINCBI36hg18NCBI36
Celera19,631,993 - 9,644,017 (-)NCBI
Cytogenetic Map1p36.22NCBI
HuRef19,674,182 - 9,686,174 (-)NCBIHuRef
CHM1_1110,508,330 - 10,520,370 (-)NCBICHM1_1
Dffa
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394149,188,599 - 149,205,110 (+)NCBIGRCm39mm39
GRCm39 Ensembl4149,188,603 - 149,205,104 (+)Ensembl
GRCm384149,104,142 - 149,120,653 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4149,104,146 - 149,120,647 (+)EnsemblGRCm38mm10GRCm38
MGSCv374148,478,262 - 148,494,759 (+)NCBIGRCm37mm9NCBIm37
MGSCv364147,947,953 - 147,964,450 (+)NCBImm8
Celera4151,371,738 - 151,386,868 (+)NCBICelera
Cytogenetic Map4E2NCBI
Dffa
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25159,540,718 - 159,553,639 (+)NCBI
Rnor_6.0 Ensembl5165,922,915 - 165,935,821 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.05165,922,893 - 165,935,822 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05169,573,089 - 169,586,003 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45166,179,130 - 166,192,029 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15166,189,332 - 166,200,048 (+)NCBI
Celera5157,811,683 - 157,824,582 (+)NCBICelera
Cytogenetic Map5q36NCBI
DFFA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1110,445,553 - 10,457,547 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl110,445,553 - 10,457,547 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v019,221,096 - 9,232,813 (-)NCBIMhudiblu_PPA_v0panPan3
DFFA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1285,364,819 - 85,372,473 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl285,364,851 - 85,373,772 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha281,966,306 - 81,973,968 (+)NCBI
ROS_Cfam_1.0286,099,825 - 86,107,488 (+)NCBI
UMICH_Zoey_3.1282,847,197 - 82,854,858 (+)NCBI
UNSW_CanFamBas_1.0283,849,698 - 83,857,360 (+)NCBI
UU_Cfam_GSD_1.0284,912,608 - 84,920,270 (+)NCBI
Dffa
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505833,811,757 - 33,821,826 (-)NCBI
SpeTri2.0NW_0049366234,296,995 - 4,307,069 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DFFA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl670,724,587 - 70,736,236 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1670,725,403 - 70,736,264 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2664,658,250 - 64,669,091 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DFFA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120121,312,291 - 121,324,055 (+)NCBI
ChlSab1.1 Ensembl20121,311,954 - 121,323,402 (+)Ensembl
Vero_WHO_p1.0NW_02366605425,226,082 - 25,238,468 (+)NCBI
Dffa
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248182,225,777 - 2,239,897 (+)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013504141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01059020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_013504141   ⟹   XP_013359595
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554863,273,712 - 3,274,510 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013359595 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013359595   ⟸   XM_013504141
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene LOC102020676 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Dffa  DNA fragmentation factor subunit alpha    DNA fragmentation factor, 45kDa, alpha polypeptide  Symbol and/or name change 5135510 APPROVED
2015-08-25 Dffa  DNA fragmentation factor, 45kDa, alpha polypeptide  LOC102020676  DNA fragmentation factor subunit alpha-like  Symbol and/or name change 5135510 APPROVED