Commd1 (copper metabolism domain containing 1) - Rat Genome Database

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Gene: Commd1 (copper metabolism domain containing 1) Chinchilla lanigera
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Symbol: Commd1
Name: copper metabolism domain containing 1
RGD ID: 8824283
Description: ENCODES a protein that exhibits copper ion binding (ortholog); identical protein binding (ortholog); phosphatidic acid binding (ortholog); INVOLVED IN cholesterol homeostasis (ortholog); copper ion homeostasis (ortholog); Golgi to plasma membrane transport (ortholog); ASSOCIATED WITH allergic disease (ortholog); Chronic Hepatitis (ortholog); Copper-Overload Cirrhosis (ortholog); FOUND IN Cul2-RING ubiquitin ligase complex (ortholog); cytoplasm (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: COMM domain-containing protein 1; copper metabolism (Murr1) domain containing 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542421,927,079 - 22,050,371 (-)Ensembl
ChiLan1.0NW_00495542421,962,837 - 22,067,745 (-)NCBIChiLan1.0ChiLan1.0
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Commd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542421,927,079 - 22,050,371 (-)Ensembl
ChiLan1.0NW_00495542421,962,837 - 22,067,745 (-)NCBIChiLan1.0ChiLan1.0
COMMD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38261,888,391 - 62,136,058 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl261,888,724 - 62,147,247 (+)Ensemblhg38GRCh38
GRCh37262,115,526 - 62,363,193 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36261,986,307 - 62,216,709 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34262,044,453 - 62,274,855NCBI
Celera261,977,700 - 62,207,946 (+)NCBICelera
Cytogenetic Map2p15NCBI
HuRef261,871,871 - 62,101,672 (+)NCBIHuRef
CHM1_1262,062,726 - 62,293,462 (+)NCBICHM1_1
T2T-CHM13v2.0261,894,549 - 62,142,285 (+)NCBIT2T-CHM13v2.0
Commd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391122,849,728 - 22,934,539 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1122,846,136 - 22,932,382 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381122,899,728 - 22,984,539 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1122,896,136 - 22,982,382 (-)Ensemblmm10GRCm38
MGSCv371122,799,728 - 22,882,284 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361122,799,728 - 22,882,284 (-)NCBIMGSCv36mm8
Celera1125,035,441 - 25,117,915 (-)NCBICelera
Cytogenetic Map11A3.2NCBI
cM Map1114.22NCBI
Commd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr814101,081,667 - 101,185,738 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl14101,081,667 - 101,185,639 (-)EnsemblGRCr8
mRatBN7.21496,880,463 - 96,984,494 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1496,880,463 - 96,984,501 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx14101,219,806 - 101,317,674 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.014102,462,099 - 102,559,973 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01498,933,706 - 99,031,576 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.014107,664,321 - 107,759,974 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14107,664,255 - 107,760,191 (-)Ensemblrn6Rnor6.0
Rnor_5.014107,724,470 - 107,726,728 (-)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.014107,804,733 - 107,835,993 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.414103,571,472 - 103,667,692 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1495,868,544 - 95,965,715 (-)NCBICelera
Cytogenetic Map14q22NCBI
COMMD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21264,248,377 - 64,495,641 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A64,252,327 - 64,499,591 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A61,970,830 - 62,216,677 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A63,121,490 - 63,349,256 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A63,121,521 - 63,349,131 (+)EnsemblpanPan2panpan1.1
COMMD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11061,886,281 - 62,059,610 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1061,886,281 - 62,059,591 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1061,775,492 - 61,947,762 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01062,894,268 - 63,067,243 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1062,882,955 - 63,068,508 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11062,578,128 - 62,750,820 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01062,882,129 - 63,053,837 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01063,177,646 - 63,350,655 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Dog Cytomap10q26NCBI
Commd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629221,150,249 - 21,324,134 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364917,247,140 - 7,420,921 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364917,247,160 - 7,421,039 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COMMD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl379,770,463 - 79,913,975 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1379,770,315 - 79,913,969 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2383,605,344 - 83,748,646 (-)NCBISscrofa10.2Sscrofa10.2susScr3
COMMD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11444,839,460 - 45,068,764 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1444,839,542 - 45,068,586 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604566,766,475 - 66,997,250 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Commd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476211,302,730 - 11,407,074 (-)NCBIHetGla 1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000019538   ⟹   ENSCLAP00000019349
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542421,927,079 - 22,050,371 (-)Ensembl
RefSeq Acc Id: XM_013514647   ⟹   XP_013370101
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542421,962,837 - 22,067,745 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013370101 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000019349
  ENSCLAP00000019349.1
RefSeq Acc Id: XP_013370101   ⟸   XM_013514647
- Sequence:
Ensembl Acc Id: ENSCLAP00000019349   ⟸   ENSCLAT00000019538
Protein Domains
COMM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000013262 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000019538 ENTREZGENE
  ENSCLAT00000019538.1 UniProtKB/TrEMBL
InterPro COMM UniProtKB/TrEMBL
  COMMD1_N UniProtKB/TrEMBL
  Murr1 UniProtKB/TrEMBL
NCBI Gene Commd1 ENTREZGENE
PANTHER COMM DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  PTHR21199 UniProtKB/TrEMBL
Pfam COMM_domain UniProtKB/TrEMBL
  COMMD1_N UniProtKB/TrEMBL
PROSITE COMM UniProtKB/TrEMBL
UniProt A0A8C2YS61_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Commd1  copper metabolism domain containing 1    copper metabolism (Murr1) domain containing 1  Symbol and/or name change 5135510 APPROVED