LOC102018506 (cytochrome c oxidase subunit 4 isoform 2, mitochondrial) - Rat Genome Database

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Gene: LOC102018506 (cytochrome c oxidase subunit 4 isoform 2, mitochondrial) Chinchilla lanigera
Analyze
Symbol: LOC102018506 (Ensembl: COX4I2)
Name: cytochrome c oxidase subunit 4 isoform 2, mitochondrial
RGD ID: 8824262
Description: ENCODES a protein that exhibits cytochrome-c oxidase activity (ortholog); INVOLVED IN cellular response to hypoxia (ortholog); mitochondrial electron transport, cytochrome c to oxygen (ortholog); ASSOCIATED WITH Exocrine Pancreatic Insufficiency, Dyserythropoietic Anemia, and Calvarial Hyperostosis (ortholog); FOUND IN mitochondrial membrane (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542229,320,720 - 29,329,127 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542229,320,720 - 29,329,082 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC102018506
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542229,320,720 - 29,329,127 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542229,320,720 - 29,329,082 (-)NCBIChiLan1.0ChiLan1.0
COX4I2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382031,637,912 - 31,645,006 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2031,637,912 - 31,645,006 (+)EnsemblGRCh38hg38GRCh38
GRCh372030,225,715 - 30,232,809 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362029,689,352 - 29,696,461 (+)NCBINCBI36Build 36hg18NCBI36
Build 342029,689,351 - 29,696,461NCBI
Celera2026,982,036 - 26,989,145 (+)NCBICelera
Cytogenetic Map20q11.21NCBI
HuRef2027,014,417 - 27,021,500 (+)NCBIHuRef
CHM1_12030,129,576 - 30,136,686 (+)NCBICHM1_1
T2T-CHM13v2.02033,362,179 - 33,369,276 (+)NCBIT2T-CHM13v2.0
Cox4i2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392152,596,093 - 152,606,957 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2152,596,093 - 152,606,957 (+)EnsemblGRCm39 Ensembl
GRCm382152,753,916 - 152,765,039 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2152,754,173 - 152,765,037 (+)EnsemblGRCm38mm10GRCm38
MGSCv372152,579,909 - 152,590,773 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362152,445,614 - 152,456,478 (+)NCBIMGSCv36mm8
Celera2158,570,176 - 158,581,023 (+)NCBICelera
Cytogenetic Map2H1NCBI
cM Map275.41NCBI
Cox4i2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83161,686,193 - 161,699,605 (+)NCBIGRCr8
mRatBN7.23141,228,443 - 141,239,337 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3141,228,443 - 141,239,331 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3145,133,387 - 145,144,280 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03153,717,214 - 153,728,105 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03151,456,966 - 151,467,861 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03148,234,546 - 148,245,424 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3148,234,193 - 148,245,416 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03154,637,397 - 154,648,541 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43143,103,348 - 143,114,236 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13143,008,969 - 143,019,858 (+)NCBI
Celera3139,977,862 - 139,988,751 (+)NCBICelera
Cytogenetic Map3q41NCBI
LOC100980404
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22137,324,893 - 37,338,299 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12037,318,011 - 37,331,411 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02027,927,883 - 27,935,305 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12029,060,321 - 29,067,448 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2029,061,447 - 29,067,440 (+)Ensemblpanpan1.1panPan2
COX4I2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12421,122,033 - 21,128,368 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2421,120,213 - 21,128,320 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2420,769,248 - 20,775,512 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02421,808,912 - 21,815,215 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2421,809,986 - 21,815,167 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12421,086,709 - 21,092,973 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02421,191,943 - 21,198,224 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02421,622,189 - 21,628,661 (+)NCBIUU_Cfam_GSD_1.0
LOC101956526
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640170,200,494 - 170,207,563 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493648518,631,826 - 18,637,675 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COX4I2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1735,341,889 - 35,346,090 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11735,340,499 - 35,346,090 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
COX4I2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1236,031,595 - 36,041,419 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl236,032,458 - 36,041,504 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605090,877,032 - 90,886,826 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101714003
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624741850,551 - 861,313 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624741852,104 - 863,660 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000025360   ⟹   ENSCLAP00000025115
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542229,320,720 - 29,329,127 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000025361   ⟹   ENSCLAP00000025116
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542229,320,720 - 29,329,127 (-)Ensembl
RefSeq Acc Id: XM_005384903   ⟹   XP_005384960
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542229,320,720 - 29,329,082 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005384960 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000025115.1
  ENSCLAP00000025116.1
RefSeq Acc Id: XP_005384960   ⟸   XM_005384903
- Sequence:
Ensembl Acc Id: ENSCLAP00000025116   ⟸   ENSCLAT00000025361
Ensembl Acc Id: ENSCLAP00000025115   ⟸   ENSCLAT00000025360


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000017250 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000025360.1 UniProtKB/TrEMBL
  ENSCLAT00000025361.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.442.10 UniProtKB/TrEMBL
InterPro Cyt_c_oxidase_su4 UniProtKB/TrEMBL
  Cyt_c_oxidase_su4_fam UniProtKB/TrEMBL
  Cyt_c_oxidase_su4_sf UniProtKB/TrEMBL
NCBI Gene LOC102018506 ENTREZGENE
PANTHER CYTOCHROME C OXIDASE SUBUNIT 4 ISOFORM 2, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR10707 UniProtKB/TrEMBL
Pfam COX4 UniProtKB/TrEMBL
PRINTS CYTCOXIDASE4 UniProtKB/TrEMBL
Superfamily-SCOP SSF81406 UniProtKB/TrEMBL
UniProt A0A8C2W6T0_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 LOC102018506  cytochrome c oxidase subunit 4 isoform 2, mitochondrial    cytochrome c oxidase subunit 4 isoform 2, mitochondrial-like  Symbol and/or name change 5135510 APPROVED