Afmid (arylformamidase) - Rat Genome Database
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Gene: Afmid (arylformamidase) Chinchilla lanigera
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Symbol: Afmid
Name: arylformamidase
RGD ID: 8823225
Description: INVOLVED IN tryptophan catabolic process to kynurenine (ortholog); PARTICIPATES IN kynurenine metabolic pathway; tryptophan metabolic pathway; FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: kynurenine formamidase
RGD Orthologs
Human
Mouse
Rat
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555064,365,926 - 4,379,447 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555064,351,623 - 4,379,528 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Afmid
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555064,365,926 - 4,379,447 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555064,351,623 - 4,379,528 (-)NCBIChiLan1.0ChiLan1.0
AFMID
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1778,187,317 - 78,207,701 (+)EnsemblGRCh38hg38GRCh38
GRCh381778,185,102 - 78,207,702 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371776,183,398 - 76,203,782 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361773,695,038 - 73,715,377 (+)NCBINCBI36hg18NCBI36
Celera1772,779,839 - 72,799,987 (+)NCBI
Cytogenetic Map17q25.3NCBI
HuRef1771,607,490 - 71,627,902 (+)NCBIHuRef
CHM1_11776,247,936 - 76,268,306 (+)NCBICHM1_1
Afmid
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911117,716,329 - 117,730,734 (+)NCBIGRCm39mm39
GRCm3811117,825,503 - 117,839,908 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11117,825,924 - 117,839,908 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711117,687,233 - 117,701,222 (+)NCBIGRCm37mm9NCBIm37
MGSCv3611117,642,014 - 117,655,995 (+)NCBImm8
Celera11129,570,944 - 129,584,931 (+)NCBICelera
Cytogenetic Map11E2NCBI
Afmid
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.010106,828,963 - 106,844,314 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10106,828,981 - 106,844,314 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010106,468,192 - 106,483,539 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera10101,606,154 - 101,621,688 (+)NCBICelera
Cytogenetic Map10q32.2NCBI
AFMID
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11777,831,451 - 77,836,671 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1777,816,908 - 77,835,905 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01772,265,365 - 72,285,764 (+)NCBIMhudiblu_PPA_v0panPan3
Afmid
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365942,794,927 - 2,805,689 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AFMID
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl123,759,708 - 3,785,836 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1123,759,688 - 3,785,829 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
AFMID
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11670,200,453 - 70,224,190 (+)NCBI
Afmid
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248017,692,928 - 7,715,902 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000018508   ⟹   ENSCLAP00000018329
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555064,365,926 - 4,379,447 (-)Ensembl
RefSeq Acc Id: XM_005407384   ⟹   XP_005407441
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555064,351,623 - 4,379,528 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005407386   ⟹   XP_005407443
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555064,351,623 - 4,379,528 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005407441 (Get FASTA)   NCBI Sequence Viewer  
  XP_005407443 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005407443   ⟸   XM_005407386
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005407441   ⟸   XM_005407384
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCLAP00000018329   ⟸   ENSCLAT00000018508


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012562 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000018329 ENTREZGENE
Ensembl Transcript ENSCLAT00000018508 ENTREZGENE
NCBI Gene Afmid ENTREZGENE