Defb127 (defensin beta 127) - Rat Genome Database

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Gene: Defb127 (defensin beta 127) Chinchilla lanigera
Analyze
Symbol: Defb127
Name: defensin beta 127
RGD ID: 8822981
Description: INVOLVED IN antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: beta-defensin 127; defensin, beta 127
RGD Orthologs
Human
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495559738,613 - 40,241 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Defb127
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495559738,613 - 40,241 (+)NCBIChiLan1.0ChiLan1.0
DEFB127
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3820157,454 - 159,163 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl20157,454 - 159,163 (+)EnsemblGRCh38hg38GRCh38
GRCh3720138,095 - 139,804 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362086,186 - 87,804 (+)NCBINCBI36Build 36hg18NCBI36
Build 342086,185 - 87,804NCBI
Celera20233,022 - 234,638 (+)NCBICelera
Cytogenetic Map20p13NCBI
HuRef2091,399 - 93,084 (+)NCBIHuRef
CHM1_120138,138 - 139,830 (+)NCBICHM1_1
T2T-CHM13v2.020199,981 - 201,681 (+)NCBIT2T-CHM13v2.0
LOC100978606
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2211,259,377 - 1,261,193 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1201,256,204 - 1,258,020 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v020381,899 - 383,717 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.120158,264 - 159,961 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl20158,264 - 159,961 (+)Ensemblpanpan1.1panPan2
DEFB127
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12420,670,771 - 20,673,961 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2420,638,838 - 20,674,041 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2420,323,712 - 20,326,902 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02421,364,577 - 21,367,547 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12420,640,599 - 20,643,788 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02420,745,804 - 20,748,947 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02421,176,566 - 21,179,535 (-)NCBIUU_Cfam_GSD_1.0
Defb127
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640169,824,186 - 169,825,913 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493648518,255,550 - 18,257,277 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DEFB127
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1734,973,781 - 34,975,728 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11734,973,682 - 34,975,738 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21739,748,447 - 39,748,749 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DEFB127
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1235,287,953 - 35,288,808 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl235,287,063 - 35,288,666 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660787,456,389 - 7,458,113 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Defb127
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247411,232,002 - 1,233,736 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005414733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01076533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005414733   ⟹   XP_005414790
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495559738,613 - 40,241 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005414790 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005414790   ⟸   XM_005414733
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Defb127 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Defb127  defensin beta 127    defensin, beta 127  Symbol and/or name change 5135510 APPROVED