Wdr18 (WD repeat domain 18) - Rat Genome Database

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Gene: Wdr18 (WD repeat domain 18) Chinchilla lanigera
Analyze
Symbol: Wdr18
Name: WD repeat domain 18
RGD ID: 8822652
Description: ASSOCIATED WITH cerebral creatine deficiency syndrome (ortholog); cyclic hematopoiesis (ortholog); genetic disease (ortholog); FOUND IN nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: WD repeat-containing protein 18
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554956,868,492 - 6,877,058 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554956,869,543 - 6,877,058 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Wdr18
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554956,868,492 - 6,877,058 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554956,869,543 - 6,877,058 (-)NCBIChiLan1.0ChiLan1.0
WDR18
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3819982,928 - 994,557 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl19984,332 - 998,438 (+)EnsemblGRCh38hg38GRCh38
GRCh3719982,928 - 994,556 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3619935,328 - 945,569 (+)NCBINCBI36Build 36hg18NCBI36
Build 3419935,327 - 945,569NCBI
Celera19916,678 - 926,912 (+)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef19757,638 - 767,854 (+)NCBIHuRef
CHM1_119983,772 - 993,686 (+)NCBICHM1_1
T2T-CHM13v2.019945,633 - 957,231 (+)NCBIT2T-CHM13v2.0
Wdr18
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391079,795,989 - 79,805,081 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1079,795,986 - 79,806,037 (+)EnsemblGRCm39 Ensembl
GRCm381079,960,152 - 79,969,247 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1079,960,152 - 79,970,203 (+)EnsemblGRCm38mm10GRCm38
MGSCv371079,422,897 - 79,431,991 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361079,363,281 - 79,372,375 (+)NCBIMGSCv36mm8
Celera1080,974,959 - 80,984,053 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
Wdr18
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8710,390,879 - 10,398,998 (-)NCBIGRCr8
mRatBN7.279,740,245 - 9,748,041 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl79,739,604 - 9,748,070 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx712,622,414 - 12,630,219 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0714,497,736 - 14,505,541 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0712,358,930 - 12,366,719 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0712,561,318 - 12,569,120 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl712,561,324 - 12,569,143 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0712,731,040 - 12,738,842 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4711,253,373 - 11,261,805 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1711,253,442 - 11,261,800 (-)NCBI
Celera77,915,706 - 7,923,502 (-)NCBICelera
Cytogenetic Map7q11NCBI
WDR18
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2205,313,178 - 5,324,645 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1194,552,471 - 4,567,790 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v019138,554 - 150,026 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.119957,924 - 967,773 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl19957,937 - 967,559 (+)Ensemblpanpan1.1panPan2
WDR18
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12057,712,854 - 57,717,988 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2057,712,740 - 57,718,107 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2057,514,611 - 57,520,882 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02058,454,768 - 58,461,041 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2058,454,838 - 58,461,015 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12057,509,870 - 57,516,109 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02057,989,398 - 57,995,656 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02058,192,437 - 58,198,697 (-)NCBIUU_Cfam_GSD_1.0
Wdr18
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118217,404,908 - 217,411,107 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936588423,443 - 432,303 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936588423,672 - 429,875 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDR18
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl277,417,539 - 77,423,485 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1277,417,536 - 77,423,812 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2277,574,085 - 77,580,114 (+)NCBISscrofa10.2Sscrofa10.2susScr3
WDR18
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.16740,712 - 750,797 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl6740,729 - 754,592 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660818,169,118 - 8,179,505 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wdr18
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248287,625,484 - 7,631,512 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248287,623,720 - 7,631,540 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000023348   ⟹   ENSCLAP00000023128
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554956,868,492 - 6,877,058 (-)Ensembl
RefSeq Acc Id: XM_005406002   ⟹   XP_005406059
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554956,869,543 - 6,877,058 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005406059 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000023128
  ENSCLAP00000023128.1
Reference Protein Sequences
RefSeq Acc Id: XP_005406059   ⟸   XM_005406002
- UniProtKB: A0A8C2VZY2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000023128   ⟸   ENSCLAT00000023348
Protein Domains
WD repeat-containing protein 18 C-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000015877 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000023348 ENTREZGENE
  ENSCLAT00000023348.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro G-protein_beta_WD-40_rep UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
  WDR18/Ipi3/RID3 UniProtKB/TrEMBL
  Wdr18_C_dom UniProtKB/TrEMBL
NCBI Gene Wdr18 ENTREZGENE
PANTHER PTHR18763 UniProtKB/TrEMBL
  WD REPEAT-CONTAINING PROTEIN 18 UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
  WD40_alt UniProtKB/TrEMBL
PRINTS GPROTEINBRPT UniProtKB/TrEMBL
PROSITE WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt A0A8C2VZY2 ENTREZGENE, UniProtKB/TrEMBL