LOC102026574 (olfactory receptor 6S1) - Rat Genome Database

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Gene: LOC102026574 (olfactory receptor 6S1) Chinchilla lanigera
Analyze
Symbol: LOC102026574 (Ensembl: OR6S1)
Name: olfactory receptor 6S1
RGD ID: 8822235
Description: ASSOCIATED WITH genetic disease (ortholog); purine nucleoside phosphorylase deficiency (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555501,434,291 - 1,438,383 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555501,434,291 - 1,438,383 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC102026574
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555501,434,291 - 1,438,383 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555501,434,291 - 1,438,383 (-)NCBIChiLan1.0ChiLan1.0
OR6S1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381420,640,696 - 20,641,691 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1420,640,696 - 20,641,691 (-)EnsemblGRCh38hg38GRCh38
GRCh371421,108,855 - 21,109,850 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361420,178,695 - 20,179,690 (-)NCBINCBI36Build 36hg18NCBI36
Build 341420,178,694 - 20,179,690NCBI
Celera14969,732 - 970,727 (-)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef141,229,809 - 1,230,804 (-)NCBIHuRef
CHM1_11421,110,894 - 21,111,889 (-)NCBICHM1_1
T2T-CHM13v2.01414,837,806 - 14,838,801 (-)NCBIT2T-CHM13v2.0
Or6s1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391451,307,768 - 51,308,899 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1451,303,758 - 51,311,892 (-)EnsemblGRCm39 Ensembl
GRCm381451,070,311 - 51,071,442 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1451,066,301 - 51,074,435 (-)EnsemblGRCm38mm10GRCm38
MGSCv371451,689,986 - 51,691,117 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361449,992,347 - 49,993,342 (-)NCBIMGSCv36mm8
Celera1447,348,028 - 47,349,159 (-)NCBICelera
Cytogenetic Map14C1NCBI
cM Map1426.37NCBI
Or6s1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81526,765,062 - 26,766,057 (-)NCBIGRCr8
mRatBN7.21524,291,540 - 24,292,535 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1524,291,243 - 24,295,559 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1527,062,704 - 27,063,699 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01528,022,158 - 28,023,153 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01526,271,259 - 26,272,254 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01527,996,520 - 27,999,286 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1527,996,815 - 27,997,810 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01531,814,450 - 31,832,055 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41527,051,246 - 27,052,241 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11527,066,945 - 27,067,941 (-)NCBI
Celera1524,611,413 - 24,612,408 (-)NCBICelera
Cytogenetic Map15p14NCBI
LOC100992836
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21522,140,201 - 22,141,614 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11421,356,688 - 21,358,101 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0141,505,560 - 1,506,695 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11419,562,882 - 19,563,877 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1419,562,882 - 19,563,877 (-)Ensemblpanpan1.1panPan2
OR6S1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11517,933,904 - 17,935,530 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1517,934,181 - 17,935,176 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1518,418,535 - 18,419,868 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01518,193,056 - 18,194,389 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11517,874,767 - 17,876,100 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01517,930,666 - 17,931,999 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01518,059,179 - 18,060,512 (-)NCBIUU_Cfam_GSD_1.0
LOC101965133
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864077,887,051 - 77,888,222 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493719071,137 - 72,125 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100154303
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl778,307,070 - 78,308,065 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1778,307,070 - 78,308,065 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2783,334,079 - 83,335,074 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103231353
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12921,166,555 - 21,168,727 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605925,263,669 - 25,264,709 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101713076
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248254,548,165 - 4,549,172 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000001006   ⟹   ENSCLAP00000000968
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555501,434,291 - 1,438,383 (-)Ensembl
RefSeq Acc Id: XM_005412143   ⟹   XP_005412200
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555501,434,291 - 1,438,383 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005412200 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000000968
  ENSCLAP00000000968.1
RefSeq Acc Id: XP_005412200   ⟸   XM_005412143
- UniProtKB: A0A8C2UJI6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000000968   ⟸   ENSCLAT00000001006

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000000750 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000001006 ENTREZGENE
  ENSCLAT00000001006.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
  Olfact_rcpt_6C-like UniProtKB/TrEMBL
NCBI Gene LOC102026574 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR 6S1 UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A8C2UJI6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 LOC102026574  olfactory receptor 6S1    olfactory receptor 6S1-like  Symbol and/or name change 5135510 APPROVED