Gene: LOC102026574 (olfactory receptor 6S1) Chinchilla lanigera |
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Analyze |
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Symbol: |
LOC102026574 (Ensembl: OR6S1) |
Name: |
olfactory receptor 6S1 |
RGD ID: |
8822235 |
Description: |
ASSOCIATED WITH genetic disease (ortholog); purine nucleoside phosphorylase deficiency (ortholog) |
Type: |
protein-coding
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RefSeq Status: |
MODEL |
RGD Orthologs |
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Alliance Genes |
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More Info |
more info ...
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More Info |
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Latest Assembly: |
ChiLan1.0 - Chinchilla ChiLan1.0 Assembly |
Position: |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955550 | 1,434,291 - 1,438,383 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955550 | 1,434,291 - 1,438,383 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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Imported Disease Annotations - ClinVar
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References
Additional References at PubMed
Genomics
Comparative Map Data
LOC102026574 (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955550 | 1,434,291 - 1,438,383 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955550 | 1,434,291 - 1,438,383 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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OR6S1 (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 14 | 20,640,696 - 20,641,691 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 14 | 20,640,696 - 20,641,691 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 14 | 21,108,855 - 21,109,850 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 14 | 20,178,695 - 20,179,690 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 14 | 20,178,694 - 20,179,690 | NCBI | | | | | Celera | 14 | 969,732 - 970,727 (-) | NCBI | | Celera | | | Cytogenetic Map | 14 | q11.2 | NCBI | | | | | HuRef | 14 | 1,229,809 - 1,230,804 (-) | NCBI | | HuRef | | | CHM1_1 | 14 | 21,110,894 - 21,111,889 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 14 | 14,837,806 - 14,838,801 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Or6s1 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 14 | 51,307,768 - 51,308,899 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 14 | 51,303,758 - 51,311,892 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 14 | 51,070,311 - 51,071,442 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 14 | 51,066,301 - 51,074,435 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 14 | 51,689,986 - 51,691,117 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 14 | 49,992,347 - 49,993,342 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 14 | 47,348,028 - 47,349,159 (-) | NCBI | | Celera | | | Cytogenetic Map | 14 | C1 | NCBI | | | | | cM Map | 14 | 26.37 | NCBI | | | | |
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Or6s1 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 15 | 26,765,062 - 26,766,057 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 15 | 24,291,540 - 24,292,535 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 15 | 24,291,243 - 24,295,559 (-) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 15 | 27,062,704 - 27,063,699 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 15 | 28,022,158 - 28,023,153 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 15 | 26,271,259 - 26,272,254 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 15 | 27,996,520 - 27,999,286 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 15 | 27,996,815 - 27,997,810 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 15 | 31,814,450 - 31,832,055 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 15 | 27,051,246 - 27,052,241 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 15 | 27,066,945 - 27,067,941 (-) | NCBI | | | | | Celera | 15 | 24,611,413 - 24,612,408 (-) | NCBI | | Celera | | | Cytogenetic Map | 15 | p14 | NCBI | | | | |
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LOC100992836 (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 15 | 22,140,201 - 22,141,614 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 14 | 21,356,688 - 21,358,101 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 14 | 1,505,560 - 1,506,695 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 14 | 19,562,882 - 19,563,877 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 14 | 19,562,882 - 19,563,877 (-) | Ensembl | panpan1.1 | | panPan2 | |
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OR6S1 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 15 | 17,933,904 - 17,935,530 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 15 | 17,934,181 - 17,935,176 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 15 | 18,418,535 - 18,419,868 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 15 | 18,193,056 - 18,194,389 (-) | NCBI | | ROS_Cfam_1.0 | | | UMICH_Zoey_3.1 | 15 | 17,874,767 - 17,876,100 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 15 | 17,930,666 - 17,931,999 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 15 | 18,059,179 - 18,060,512 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
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LOC101965133 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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LOC100154303 (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 7 | 78,307,070 - 78,308,065 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 7 | 78,307,070 - 78,308,065 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 7 | 83,334,079 - 83,335,074 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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LOC103231353 (Chlorocebus sabaeus - green monkey) |
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LOC101713076 (Heterocephalus glaber - naked mole-rat) |
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Expression
Sequence
RefSeq Acc Id: |
ENSCLAT00000001006 ⟹ ENSCLAP00000000968 |
Type: |
CODING |
Position: |
Chinchilla Assembly | Chr | Position (strand) | Source |
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ChiLan1.0 Ensembl | NW_004955550 | 1,434,291 - 1,438,383 (-) | Ensembl |
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RefSeq Acc Id: |
XM_005412143 ⟹ XP_005412200 |
Type: |
CODING |
Position: |
Chinchilla Assembly | Chr | Position (strand) | Source |
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ChiLan1.0 | NW_004955550 | 1,434,291 - 1,438,383 (-) | NCBI |
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Sequence: |
ATTTGGGTGCATTGCTACTGAAAGCCAGTTATGTATGGAGATCATTCATACCTTTTAGTAGGAA GATTGATTAGAAACCAATGACTTCAGTCTGCTTCCTTGCTCTCAGGGATGCCAGGAAGGGTGGG GTCTAAAAGAAGAAAACTGAGACTCTATTTAAAATTCATAAGCAAAAAAGTGAAGACATGGCCC TAAGTGGGACACTTTTTCAGCCACTAGAGATGAAAAGAACTGTGGACCTGTGATTGGAGCAAGT CAGGATATGCGTACCGCACCATGTAAAATAAGTTTCTGGACTGCTCTCACTAGGACCATGTTCA CACTGTCGCTTAGGTGGAAAAGACAATGGCTCTTGGTGGGAACCAGAGTGGTGGGATGACAGAG TTTGTCCTGGCGGGCTTCCCAGAACTCAACGGCACAAGAACGGAACTGTTTTCAGTGCTCCTTC TTGCCTATCTGCTGACTCTGACCAGCAATGTGTTGATCGTGGGAGTGGTAGGAGCTGATACTCG CCTACAAACCCCCATGTACTTCTTTCTGGGTCACCTGTCCTGCCTGGAGATTCTGATCACTTCG GTCATCATTCCTAAGATGCTGAGCAGTTTCCTGTCGAGGCAACACACTATTTCCTTCTCCGCAT GTGTTACTCAGTTTTATTTTTATTTCTTCCTTGGGGCTTCGGAGCTCCTCCTGCTGGCTGTCAT GTCTGTGGATCGCTACCTGGCCGTCTGTCATCCTCTGCGCTACCCCTTGCTCATGAATGGAGCT GTGTGTTCACGCATGGCCTTGGCCTGCTGGATGGGAGGACTCTTCCCTGTGCTTGGTCCCACAG TGGCAGTGGCCCTGCTCCCTTTCTGTAAACAGGGAGCTGTGGTACAGCACTTCTTCTGTGACAG TGGGCCACTGCTGCACCTGGCATGCACCAACACCAAGAAGCTGGTGGAGACGGACTTCATCTTG GCCTCTCTCGTCATTGTATCATCACTGGCAATTACTGCTGCCTCCTATGGCCACATAATCTTGG CTGTCCTACGCATGCCCTCTGCTTCAGGTCGCCAGAAGGCCTTCTCCACCTGTACATCCCACTT GATGGTTGTGACCCTCTTCTACGGAAGTGCCATTTTTCTCTATGTGCGGCCATCGCAGAGTGGC TCTGTGGACACTAACTGGGTAGCAACAATGATAACAACGTTTGTAACACCAGTGCTGAACCCAT TCATCTATGCTCTGCTCAATGAGCAAGTCAAGGAGGCTTTGAAGGACATGTTCAGGAAGATAGC AGCCAGCTTTTTAAGGAGTCTTTCACCCGCTGAACACTTCCTTAAGAAAACAGTAGAGTGAGAG TGAAGGAATGCAGCAACCAATCTGAAGTCCAAATAGCTTCCTTATCATTTTCCCATCACCATCG TGGACATCACCAAAGGACTGAATTCTGGAACCACTGATGAACTTCAGAGGTATCAGGTCTACCT TCCTTCTATTTAAGGCAAAATTCATTGATTCTATATGATGGC
hide sequence
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RefSeq Acc Id: |
XP_005412200 ⟸ XM_005412143 |
- UniProtKB: |
A0A8C2UJI6 (UniProtKB/TrEMBL) |
- Sequence: |
MALGGNQSGGMTEFVLAGFPELNGTRTELFSVLLLAYLLTLTSNVLIVGVVGADTRLQTPMYFF LGHLSCLEILITSVIIPKMLSSFLSRQHTISFSACVTQFYFYFFLGASELLLLAVMSVDRYLAV CHPLRYPLLMNGAVCSRMALACWMGGLFPVLGPTVAVALLPFCKQGAVVQHFFCDSGPLLHLAC TNTKKLVETDFILASLVIVSSLAITAASYGHIILAVLRMPSASGRQKAFSTCTSHLMVVTLFYG SAIFLYVRPSQSGSVDTNWVATMITTFVTPVLNPFIYALLNEQVKEALKDMFRKIAASFLRSLS PAEHFLKKTVE
hide sequence
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RefSeq Acc Id: |
ENSCLAP00000000968 ⟸ ENSCLAT00000001006 |
Additional Information
Nomenclature History
Date |
Current Symbol |
Current Name |
Previous Symbol |
Previous Name |
Description |
Reference |
Status |
2015-08-25 |
LOC102026574 |
olfactory receptor 6S1 |
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olfactory receptor 6S1-like |
Symbol and/or name change |
5135510 |
APPROVED |
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