Stpg4 (sperm-tail PG-rich repeat containing 4) - Rat Genome Database

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Gene: Stpg4 (sperm-tail PG-rich repeat containing 4) Chinchilla lanigera
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Symbol: Stpg4
Name: sperm-tail PG-rich repeat containing 4
RGD ID: 8822062
Description: ENCODES a protein that exhibits chromatin binding (ortholog); histone binding (ortholog); INVOLVED IN C-5 methylation of cytosine (ortholog); DNA demethylation of male pronucleus (ortholog); positive regulation of DNA demethylation (ortholog); ASSOCIATED WITH Lynch syndrome (ortholog); FOUND IN cytoplasm (ortholog); female pronucleus (ortholog); germinal vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: chromosome unknown open reading frame, human C2orf61; LOC102016954; uncharacterized protein C2orf61 homolog
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544113,925,403 - 13,969,052 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544113,926,926 - 13,969,316 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Stpg4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544113,925,403 - 13,969,052 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544113,926,926 - 13,969,316 (-)NCBIChiLan1.0ChiLan1.0
STPG4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl247,045,538 - 47,155,308 (-)EnsemblGRCh38hg38GRCh38
GRCh38247,086,991 - 47,155,308 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37247,314,130 - 47,382,447 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36247,209,091 - 47,235,930 (-)NCBINCBI36hg18NCBI36
Celera247,152,977 - 47,221,350 (-)NCBI
Cytogenetic Map2p21NCBI
HuRef247,051,202 - 47,119,655 (-)NCBIHuRef
CHM1_1247,244,382 - 47,312,761 (-)NCBICHM1_1
Stpg4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391787,696,998 - 87,735,526 (-)NCBIGRCm39mm39
GRCm39 Ensembl1787,696,999 - 87,735,169 (-)Ensembl
GRCm381787,389,570 - 87,428,081 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1787,389,571 - 87,427,741 (-)EnsemblGRCm38mm10GRCm38
MGSCv371787,788,911 - 87,827,081 (-)NCBIGRCm37mm9NCBIm37
MGSCv361787,297,897 - 87,336,067 (-)NCBImm8
Celera1791,786,747 - 91,825,778 (-)NCBICelera
Cytogenetic Map17E4NCBI
Stpg4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.267,108,827 - 7,158,519 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl67,108,869 - 7,151,390 (+)Ensembl
Rnor_6.0611,014,596 - 11,063,509 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl611,022,034 - 11,063,092 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0621,002,682 - 21,051,287 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4610,902,817 - 10,947,732 (-)NCBIRGSC3.4rn4RGSC3.4
Celera66,860,173 - 6,901,319 (+)NCBICelera
Cytogenetic Map6q12NCBI
STPG4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A48,131,530 - 48,199,723 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A48,131,547 - 48,199,596 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A47,201,536 - 47,271,253 (-)NCBIMhudiblu_PPA_v0panPan3
STPG4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11049,255,715 - 49,294,752 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1049,255,723 - 49,294,708 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1049,109,366 - 49,147,983 (-)NCBI
ROS_Cfam_1.01050,126,166 - 50,164,993 (-)NCBI
UMICH_Zoey_3.11049,834,129 - 49,872,690 (-)NCBI
UNSW_CanFamBas_1.01050,123,664 - 50,162,186 (-)NCBI
UU_Cfam_GSD_1.01050,307,790 - 50,346,314 (-)NCBI
Stpg4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629233,797,317 - 33,838,489 (+)NCBI
SpeTri2.0NW_0049365085,229,734 - 5,267,094 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STPG4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl393,372,045 - 93,438,068 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1393,386,523 - 93,438,070 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2399,516,465 - 99,563,978 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STPG4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11460,046,418 - 60,150,224 (+)NCBI
ChlSab1.1 Ensembl1460,047,449 - 60,104,570 (+)Ensembl
Vero_WHO_p1.0NW_02366604551,741,463 - 51,800,004 (-)NCBI
Stpg4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473828,481,864 - 28,525,079 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000011250   ⟹   ENSCLAP00000011114
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495544113,925,403 - 13,969,052 (-)Ensembl
RefSeq Acc Id: XM_005390990   ⟹   XP_005391047
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544113,926,926 - 13,969,047 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013517605   ⟹   XP_013373059
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544113,948,411 - 13,969,313 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013517606   ⟹   XP_013373060
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544113,926,926 - 13,969,316 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005391047 (Get FASTA)   NCBI Sequence Viewer  
  XP_013373059 (Get FASTA)   NCBI Sequence Viewer  
  XP_013373060 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005391047   ⟸   XM_005390990
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013373060   ⟸   XM_013517606
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013373059   ⟸   XM_013517605
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000011114   ⟸   ENSCLAT00000011250


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007677 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000011114 ENTREZGENE
Ensembl Transcript ENSCLAT00000011250 ENTREZGENE
NCBI Gene LOC102016954 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-21 Stpg4  sperm-tail PG-rich repeat containing 4  LOC102016954  chromosome unknown open reading frame, human C2orf61  Symbol and/or name change 5135510 APPROVED