Slc19a2 (solute carrier family 19 member 2) - Rat Genome Database

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Gene: Slc19a2 (solute carrier family 19 member 2) Chinchilla lanigera
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Symbol: Slc19a2
Name: solute carrier family 19 member 2
RGD ID: 8821926
Description: ENCODES a protein that exhibits thiamine transmembrane transporter activity (ortholog); INVOLVED IN pyridoxine transport (ortholog); spermatogenesis (ortholog); thiamine diphosphate biosynthetic process (ortholog); PARTICIPATES IN thiamine metabolic pathway; ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); chronic kidney disease (ortholog); Deafness (ortholog); FOUND IN plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: solute carrier family 19 (thiamine transporter), member 2; thiamine transporter 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554627,786,913 - 7,805,792 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554627,786,920 - 7,804,828 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Slc19a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554627,786,913 - 7,805,792 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554627,786,920 - 7,804,828 (+)NCBIChiLan1.0ChiLan1.0
SLC19A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381169,463,909 - 169,485,970 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1169,463,909 - 169,485,944 (-)EnsemblGRCh38hg38GRCh38
GRCh371169,433,147 - 169,455,208 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361167,699,791 - 167,721,865 (-)NCBINCBI36Build 36hg18NCBI36
Build 341166,164,825 - 166,186,899NCBI
Celera1142,542,928 - 142,564,985 (-)NCBICelera
Cytogenetic Map1q24.2NCBI
HuRef1140,656,190 - 140,678,233 (-)NCBIHuRef
CHM1_11170,855,181 - 170,877,241 (-)NCBICHM1_1
T2T-CHM13v2.01168,819,254 - 168,841,316 (-)NCBIT2T-CHM13v2.0
Slc19a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391164,076,615 - 164,092,954 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1164,076,615 - 164,092,954 (+)EnsemblGRCm39 Ensembl
GRCm381164,249,046 - 164,265,385 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1164,249,046 - 164,265,385 (+)EnsemblGRCm38mm10GRCm38
MGSCv371166,179,186 - 166,195,500 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361166,085,730 - 166,102,044 (+)NCBIMGSCv36mm8
Celera1166,660,848 - 166,702,585 (+)NCBICelera
Cytogenetic Map1H2.2NCBI
cM Map171.56NCBI
Slc19a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81379,135,118 - 79,149,316 (+)NCBIGRCr8
mRatBN7.21376,601,975 - 76,616,175 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1376,601,900 - 76,616,172 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1379,220,427 - 79,234,615 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01380,524,434 - 80,538,620 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01377,779,112 - 77,793,296 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01382,552,586 - 82,566,586 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1382,552,550 - 82,566,586 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01387,436,626 - 87,450,479 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41380,017,780 - 80,031,777 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11380,031,967 - 80,045,928 (+)NCBI
Celera1376,335,951 - 76,350,141 (+)NCBICelera
Cytogenetic Map13q23NCBI
SLC19A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2180,283,266 - 80,305,302 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1179,951,685 - 79,973,705 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01144,946,248 - 144,968,736 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11148,668,687 - 148,690,713 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1148,668,687 - 148,690,713 (-)Ensemblpanpan1.1panPan2
SLC19A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1729,094,341 - 29,114,319 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl729,094,101 - 29,113,249 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha728,625,929 - 28,645,880 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0728,896,300 - 28,916,259 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl728,896,045 - 28,914,377 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1728,744,718 - 28,764,672 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0728,780,311 - 28,800,248 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0729,017,158 - 29,037,096 (+)NCBIUU_Cfam_GSD_1.0
Slc19a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934499,350,348 - 99,381,143 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648117,197,095 - 17,227,891 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648117,197,133 - 17,225,435 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC19A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl481,510,098 - 81,536,464 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1481,510,221 - 81,535,099 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2489,134,887 - 89,159,766 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC19A2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12559,568,801 - 59,587,398 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2559,568,893 - 59,585,094 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605561,243,780 - 61,261,916 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc19a2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248267,380,827 - 7,400,665 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248267,382,158 - 7,400,702 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000020917   ⟹   ENSCLAP00000020719
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554627,786,913 - 7,805,792 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000020918   ⟹   ENSCLAP00000020720
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554627,787,036 - 7,802,917 (+)Ensembl
RefSeq Acc Id: XM_005398189   ⟹   XP_005398246
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554627,786,920 - 7,804,828 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005398246 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000020719
  ENSCLAP00000020719.1
  ENSCLAP00000020720.1
RefSeq Acc Id: XP_005398246   ⟸   XM_005398189
- UniProtKB: A0A8C2VUG0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000020719   ⟸   ENSCLAT00000020917
Ensembl Acc Id: ENSCLAP00000020720   ⟸   ENSCLAT00000020918


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000014197 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000020917 ENTREZGENE
  ENSCLAT00000020917.1 UniProtKB/TrEMBL
  ENSCLAT00000020918.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
InterPro Folate_carrier UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
  ThTr-1 UniProtKB/TrEMBL
NCBI Gene Slc19a2 ENTREZGENE
PANTHER PTHR10686 UniProtKB/TrEMBL
  THIAMINE TRANSPORTER 1 UniProtKB/TrEMBL
Pfam Folate_carrier UniProtKB/TrEMBL
PIRSF Folate_carrier UniProtKB/TrEMBL
  Thiamine_transporter_1 UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/TrEMBL
UniProt A0A8C2VUG0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2W1U6_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Slc19a2  solute carrier family 19 member 2    solute carrier family 19 (thiamine transporter), member 2  Symbol and/or name change 5135510 APPROVED