Txnl1 (thioredoxin like 1) - Rat Genome Database

Name: Txnl1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Txnl1 (thioredoxin like 1) Chinchilla lanigera

Analyze

Symbol:

Txnl1

Name:

thioredoxin like 1

RGD ID:

8821700

Description:

ENCODES a protein that exhibits disulfide oxidoreductase activity (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

thioredoxin-like 1; thioredoxin-like protein 1

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TXNL1 (thioredoxin like 1)	NCBI	Ortholog
Mus musculus (house mouse):	Txnl1 (thioredoxin-like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Txnl1 (thioredoxin-like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TXNL1 (thioredoxin like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TXNL1 (thioredoxin like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Txnl1 (thioredoxin like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TXNL1 (thioredoxin like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TXNL1 (thioredoxin like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Txnl1 (thioredoxin like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955402	41,022,771 - 41,058,727 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955402	41,022,771 - 41,058,731 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cytoplasm (ISO)

cytosol (ISO)

Molecular Function

disulfide oxidoreductase activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data

Txnl1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955402	41,022,771 - 41,058,727 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955402	41,022,771 - 41,058,731 (-)	NCBI	ChiLan1.0	ChiLan1.0

TXNL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	18	56,597,209 - 56,638,592 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	18	56,597,209 - 56,651,600 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	18	54,264,440 - 54,305,823 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	18	52,421,051 - 52,456,874 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	18	52,421,050 - 52,456,874	NCBI
Celera	18	50,987,191 - 51,023,052 (-)	NCBI		Celera
Cytogenetic Map	18	q21.31	NCBI
HuRef	18	50,981,411 - 51,017,287 (-)	NCBI		HuRef
CHM1_1	18	54,265,556 - 54,301,403 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	18	56,799,245 - 56,840,564 (-)	NCBI		T2T-CHM13v2.0

Txnl1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	63,795,872 - 63,825,535 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	63,794,165 - 63,841,872 (-)	Ensembl		GRCm39 Ensembl
GRCm38	18	63,662,801 - 63,692,359 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	63,661,094 - 63,708,801 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	18	63,822,455 - 63,852,013 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	18	63,788,170 - 63,817,728 (-)	NCBI		MGSCv36	mm8
Celera	18	64,929,954 - 64,959,513 (-)	NCBI		Celera
Cytogenetic Map	18	E1	NCBI
cM Map	18	37.06	NCBI

Txnl1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	59,397,275 - 59,428,072 (-)	NCBI		GRCr8
mRatBN7.2	18	57,125,362 - 57,155,167 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	57,125,369 - 57,165,266 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	18	59,207,168 - 59,234,005 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	59,924,212 - 59,951,049 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	57,752,119 - 57,778,980 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	59,056,454 - 59,086,278 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	59,059,375 - 59,086,256 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	58,276,626 - 58,304,131 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	59,823,127 - 59,849,853 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	18	59,896,328 - 59,923,054 (-)	NCBI
Celera	18	55,269,930 - 55,296,882 (-)	NCBI		Celera
Cytogenetic Map	18	q12.1	NCBI

TXNL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	17	74,135,337 - 74,184,108 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	18	59,822,691 - 59,863,743 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	18	49,988,636 - 50,024,604 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	18	53,322,604 - 53,358,137 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	18	53,322,604 - 53,358,137 (-)	Ensembl	panpan1.1		panPan2

TXNL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	19,171,267 - 19,203,898 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	19,171,314 - 19,203,898 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	20,155,743 - 20,188,486 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	19,054,700 - 19,087,419 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	19,054,696 - 19,088,826 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	19,110,858 - 19,143,732 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	19,006,351 - 19,038,924 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	19,277,297 - 19,310,025 (+)	NCBI		UU_Cfam_GSD_1.0

Txnl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404944	32,311,302 - 32,344,583 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936497	7,550,302 - 7,582,582 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936497	7,550,307 - 7,583,596 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TXNL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	105,973,641 - 106,013,574 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	105,974,021 - 106,013,408 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	116,722,915 - 116,763,482 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TXNL1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	18	23,087,286 - 23,124,646 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	18	23,087,389 - 23,116,505 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666060	2,437,028 - 2,474,840 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Txnl1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624792	2,127,685 - 2,166,400 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624792	2,128,154 - 2,166,291 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005372969	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005372970	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_259083	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01001005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01001006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01001007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCQ01036785	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000014169 ⟹ ENSCLAP00000014012

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955402	41,022,771 - 41,058,727 (-)	Ensembl

RefSeq Acc Id:

XM_005372969 ⟹ XP_005373026

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955402	41,022,771 - 41,058,731 (-)	NCBI

Sequence:

show sequence

TACGCAAGCGCGGTCGGCACTGCCGCGCGGTGGCTCCTGGGTGCCGCTCACCTTCGCTCCCCGC
GCCTCTCCCCTCCTCCTGCCGTCCCCGCCCCCTCGCCGCTCCGCTGCCTGGCGTGACTCGGCAC
GGAGAGCCGCGGGAGGAGACGCGGCTGTCGCCAGCTCCTCTGTCCAGGCCTCGGCCTTGCTGAG
CCTTTCCCCGTCCGCGCCCGGGTTTTCTTCTTCACTTGAGAAGCCGGAGCCGTCGCGGCCGCCC
GAGCGGGCTCTGTGTGAGCATGGTGGGTGTGAAGCCGGTCGGGAGCGACCCGGATTTCCAGCCG
GAGCTGAGCGGCGCGGGCTCCAGACTCGCCGTCGTCAAGTTCACCATGAGAGGGTGTGGACCAT
GTTTGAGGATTGCTCCAGCATTCAGTTCTATGAGTAATAAATATCCACAGGCTGTTTTCTTGGA
GGTAGATGTACATCAGTGTCAGGGAACAGCTGCCACCAACAATATATCAGCAACACCTACATTT
TTATTTTTTCGAAATAAAGTGAGAATTGATCAGTATCAAGGAGCAGATGCTGTGGGACTAGAAG
AAAAAATCAAGCAGCACTTAGAAAATGACCCTGGAAGTAATGAGGACACAGACATTCCAAAAGG
CTATATGGACTTAATGCCTTTTATAAACAAGGCTGGTTGTGAATGTCTTAATGAAAGTGATGAG
CATGGGTTTGACAACTGTTTAAGAAAAGATATGACCTTCTTGGAATCTGACTGTGATGAACAGC
TACTTATTACGGTGGCATTCAATCAACCTGTTAAGCTTTATTCCATGAAATTTCAAGGACCAGA
TAATGGTCAGGGTCCCAAATATGTAAAGATTTTTATCAACCTACCCCGATCTATGGATTTTGAA
GAAGCAGAAAGAAGTGAGCCAACTCAAGCTCTAGAGCTGACAGAGGATGATATTAAAGAGGATG
GCATTGTTCCTCTTCGTTATGTTAAGTTTCAGAATGTTAACAGTGTGACCATATTTGTTCAGTC
TAATCAAGGTGAAGAAGAAACAACAAGAATTTCATATTTTACTTTTATTGGTACTCCTGTCCAG
GCAACAAATATGAATGACTTCAAACGAAGAATGCATATTGGCAAGTTGAGAGTTATCAACCTGT
GAAACAGTAGTTGGCAAAAAAGGAGAAAGCCATTAAGATTCAAACGACACTGGAAGACCTCTTG
CAATCAGATTTGCAGCTCCTGGATAATTGCTTGATTCTCTCCAGAGACTGTCAATATTGCATTC
ATTGCCATCACCAATAAATCATTGCTTTTGTTCAGATGGTATCAATAGTGTTTCTATTGTAATC
TTGTTACATGCAATTGTAAATAAAAGTCACTACTTTTGCCAAGCTTAAAATTTTGTCATTTATA
TAGTATTTTCCCTTACCTTTTATTTGGAAATTATTCAGCTTCTGATTTTAGGAGAGACAAGTAT
CTGGTAGCATATCATTTGAAAGCTAGTTTCTCTTTTTAGAGGAACAAAACTGTTGTAGGGAATT
AAGGAGTATATGTGTACATACACATATACAGGCACATAGAACAAATGATTTTGATAAATAAACT
TGAATAGCTAACCAAGTAGAAAAGAATACTGACTTACATTTTTATTAAAAGACATTAGAGTACT
TGGGCAAAAGAAGTTACTCAAGTTGGAAACTATCAGAAATAAATAGGTTCAATGAGATTGAACT
ACTCTTACCTAGAACTGTTAATTAGCCTACACATTCTCATGCCAGGATTTTAATCCCTTCTGAA
TAAATGTTAAACGTTTGAGTTAGCCATTTTCTTTACCAAAGGACGAGTGTTGAATTCAGACAGT
TGGGAAAAATATAGGACAGTGAACTCCTGAAAAAATAGAAATCATTATATTTAATTCAGTACCA
TCTGATTATAAAAACGTATTAATGTACAGAGAATATGATTTAAGTTTGAAAATGAATTGACCAA
GTGTTTATATGTAAGATGCTTCACAGAAAGCTGGCTGAACAAAACATTTGTTCTTTATTGCTTT
TTTTTTTAAATCTCAAAATTACCTGGAAAGTATTGTATTGGTAAATTTAATTTTTATATTTTGA
AGTGTTTTAAAAATTTAATATTTTAAAAATACTAAGACTCTAACTTGTGATTCAGTTAGTGCAT
TTGAGGACATTCTGTCTAAAGAAAAACAAATACTGTTTGCCCTTGGGAGATCAATGTATTTATA
CATGATTATGAAAAAATCTGTGTGTAAGTTTTAGTGTTGAAGTGGTCACTTTCTGAAATCCGAG
TGTCATTAATGTTTTAGTTCATTTGTATGTGCACACAGTAACCGTGGTGATGTCTCTATTTTAT
GTATTTCACAGTTTTCTTGCCTTGGGTCGAGTGGTGGCAGAAGTGCAAAAATAAAAGTTTATAA
CAATCCAAA

hide sequence

RefSeq Acc Id:

XM_005372970 ⟹ XP_005373027

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955402	41,022,771 - 41,058,727 (-)	NCBI

Sequence:

show sequence

CAAGCGCGGTCGGCACTGCCGCGCGGTGGCTCCTGGGTGCCGCTCACCTTCGCTCCCCGCGCCT
CTCCCCTCCTCCTGCCGTCCCCGCCCCCTCGCCGCTCCGCTGCCTGGCGTGACTCGGCACGGAG
AGCCGCGGGAGGAGACGCGGCTGTCGCCAGCTCCTCTGTCCAGGCCTCGGCCTTGCTGAGCCTT
TCCCCGTCCGCGCCCGGGTTTTCTTCTTCACTTGAGAAGCCGGAGCCGTCGCGGCCGCCCGAGC
GGGCTCTGTGTGAGCATGGTGGGTGTGAAGCCGGTCGGGAGCGACCCGGATTTCCAGCCGGAGC
TGAGCGGCGCGGGCTCCAGACTCGCCGTCGTCAAGTTCACCATGAGAGGGTGTGGACCATGTTT
GAGGATTGCTCCAGCATTCAGTTCTATGAGTAATAAATATCCACAGGCTGTTTTCTTGGAGGTA
GATGTACATCAGTGTCAGGGAACAGCTGCCACCAACAATATATCAGCAACACCTACATTTTTAT
TTTTTCGAAATAAAGTGAGAATTGATCAGTATCAAGGAGCAGATGCTGTGGGACTAGAAGAAAA
AATCAAGCAGCACTTAGAAAATGACCCTGGAAGTAATGAGGACACAGACATTCCAAAAGGCTAT
ATGGACTTAATGCCTTTTATAAACAAGGCTGGTTGTGAATGTCTTAATGAAAGTGATGAGCATG
GGTTTGACAACTGTTTAAGAAAAGATATGACCTTCTTGGAATCTGACTGTGATGAACAGCTACT
TATTACGGTGGCATTCAATCAACCTGTTAAGCTTTATTCCATGAAATTTCAAGGACCAGATAAT
GGTCAGGGTCCCAAATATGTAAAGATTTTTATCAACCTACCCCGATCTATGGATTTTGAAGAAG
CAGAAAGAAGTGAGCCAACTCAAGCTCTAGAGCTGACAGAGGATGATATTAAAGAGGATGGCAT
TGTTCCTCTTCGTTATGTTAAGTTTCAGAATGTTAACAGTGTGACCATATTTGTTCAGTCTAAT
CAAGGTGAAGAAGAAACAACAAGAATTTCATATTTTACTTTTATTGGTACTCCTGTCCAGGCAA
CAAATATGAATGACTTCAAACGAGTAGTTGGCAAAAAAGGAGAAAGCCATTAAGATTCAAACGA
CACTGGAAGACCTCTTGCAATCAGATTTGCAGCTCCTGGATAATTGCTTGATTCTCTCCAGAGA
CTGTCAATATTGCATTCATTGCCATCACCAATAAATCATTGCTTTTGTTCAGATGGTATCAATA
GTGTTTCTATTGTAATCTTGTTACATGCAATTGTAAATAAAAGTCACTACTTTTGCCAAGCTTA
AAATTTTGTCATTTATATAGTATTTTCCCTTACCTTTTATTTGGAAATTATTCAGCTTCTGATT
TTAGGAGAGACAAGTATCTGGTAGCATATCATTTGAAAGCTAGTTTCTCTTTTTAGAGGAACAA
AACTGTTGTAGGGAATTAAGGAGTATATGTGTACATACACATATACAGGCACATAGAACAAATG
ATTTTGATAAATAAACTTGAATAGCTAACCAAGTAGAAAAGAATACTGACTTACATTTTTATTA
AAAGACATTAGAGTACTTGGGCAAAAGAAGTTACTCAAGTTGGAAACTATCAGAAATAAATAGG
TTCAATGAGATTGAACTACTCTTACCTAGAACTGTTAATTAGCCTACACATTCTCATGCCAGGA
TTTTAATCCCTTCTGAATAAATGTTAAACGTTTGAGTTAGCCATTTTCTTTACCAAAGGACGAG
TGTTGAATTCAGACAGTTGGGAAAAATATAGGACAGTGAACTCCTGAAAAAATAGAAATCATTA
TATTTAATTCAGTACCATCTGATTATAAAAACGTATTAATGTACAGAGAATATGATTTAAGTTT
GAAAATGAATTGACCAAGTGTTTATATGTAAGATGCTTCACAGAAAGCTGGCTGAACAAAACAT
TTGTTCTTTATTGCTTTTTTTTTTAAATCTCAAAATTACCTGGAAAGTATTGTATTGGTAAATT
TAATTTTTATATTTTGAAGTGTTTTAAAAATTTAATATTTTAAAAATACTAAGACTCTAACTTG
TGATTCAGTTAGTGCATTTGAGGACATTCTGTCTAAAGAAAAACAAATACTGTTTGCCCTTGGG
AGATCAATGTATTTATACATGATTATGAAAAAATCTGTGTGTAAGTTTTAGTGTTGAAGTGGTC
ACTTTCTGAAATCCGAGTGTCATTAATGTTTTAGTTCATTTGTATGTGCACACAGTAACCGTGG
TGATGTCTCTATTTTATGTATTTCACAGTTTTCTTGCCTTGGGTCGAGTGGTGGCAGAAGTGCA
AAAATAAAAGTTTATAACAATCCAAA

hide sequence

RefSeq Acc Id:

XR_259083

Type:

NON-CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955402	41,022,771 - 41,058,730 (-)	NCBI

Sequence:

show sequence

ACGCAAGCGCGGTCGGCACTGCCGCGCGGTGGCTCCTGGGTGCCGCTCACCTTCGCTCCCCGCG
CCTCTCCCCTCCTCCTGCCGTCCCCGCCCCCTCGCCGCTCCGCTGCCTGGCGTGACTCGGCACG
GAGAGCCGCGGGAGGAGACGCGGCTGTCGCCAGCTCCTCTGTCCAGGCCTCGGCCTTGCTGAGC
CTTTCCCCGTCCGCGCCCGGGTTTTCTTCTTCACTTGAGAAGCCGGAGCCGTCGCGGCCGCCCG
AGCGGGCTCTGTGTGAGCATGGTGGGTGTGAAGCCGGTCGGGAGCGACCCGGATTTCCAGCCGG
AGCTGAGCGGCGCGGGCTCCAGACTCGCCGTCGTCAAGTTCACCATGAGAGGGTGTGGACCATG
TTTGAGGATTGCTCCAGCATTCAGTTCTATGAGTAATAAATATCCACAGGCTGTTTTCTTGGAG
GTAGATGTACATCAGTGTCAGGGAACAGCTGCCACCAACAATATATCAGCAACACCTACATTTT
TATTTTTTCGAAATAAAGTGAGAATTGATCAGTATCAAGGAGCAGATGCTGTGGGACTAGAAGA
AAAAATCAAGCAGCACTTAGAAAATGACCCTGGAAGTAATGAGGACACAGACATTCCAAAAGGC
TATATGGACTTAATGCCTTTTATAAACAAGGCTGGTTGTGAATGTCTTAATGAAAGTGATGAGC
ATGGGTTTGACAACTGTTTAAGAAAAGATATGACCTTCTTGGAATCTGACTGTGATGAACAGCT
ACTTATTACGGTGGCATTCAATCAACCTGTTAAGCTTTATTCCATGAAATTTCAAGGACCAGAT
AATGGTCAGGGTCCCAAATATGTAAAGATTTTTATCAACCTACCCCGATCTATGGATTTTGAAG
AAGCAGAAAGAAGTGAGCCAACTCAAGCTCTAGAGCTGACAGAGGATGATATTAAAGAGGATGG
CATTGTTCCTCTTCGTTATGTTAAGTTTCAGAATGTTAACAGTGTGACCATATTTGTTCAGTCT
AATCAAGGTGAAGAAGAAACAACAAGAATTTCATATTTTACTTTTATTGGTACTCCTGTCCAGG
CAACAAATATGAATGACTTCAAACGACTTTTTTAATCCAACTCAAACGAACTAAAACCAGAAGA
TTTTTTTTAATGAAGTAATAAAAGATTGACCTTATCTCACAATACTCCCCTCCTTGCTTCTCTG
CTCATCTAGCACCTGTCTGCTCTCACCCTTTCCATGTTCTCTCCATTGTCACTGCAAGATGTCT
ACAGCTTCCATCACCTGGATCAGCCTTGTTACCTAGATTGCCTCAACAGTCTCCTTCTTCAAAT
CTCATCCTAGCCATATTTCTCAGTTGGCCTTTTTATTTTCTTTTGGGCTTGCAGCTAGGTGCTT
TAATTTCATTACTCTACTGTGCTGCTCACCAGACTTTTACTTTTTACTGTTTCATGGTTACTTT
TGTTCTGGATTTTGAGGAGTGACACTGAAATAAAACTTAAATTGTTATAATGCTTTCAGATTTA
ACTAGATGATGTTTTAATCCATTCTAAAATTTTATTTTTTAGGAGCTACAGAATCATTTTGGAA
ATAGTTTTTATACTAGAGCTGCTATAATACATTAATTAGGTTTTACTTGAGGGATGTGGGTTTT
CTTTTTCTCTTTGCACTGTTAGCCCCAAAGTCATTTTGATGATTGACGTGGTTGTATCCTTTAC
TTTGGCCCATCTAAGAGCTCAAGGCCAGTTGAAGGATTTACGGACTGAATGATAGTCTGAGTCA
GAATATTAACATAGAAGATCAATGGACTCTGCTGAATAAATATCTTAACATCTAATTTTGATGT
ACATAAACTTTTGTTTGAGGTGTAATATAAAGCTTAAGAAAGAGTGAAAGAGCTTTACATTTGG
GGTAGTTGGCAAAAAAGGAGAAAGCCATTAAGATTCAAACGACACTGGAAGACCTCTTGCAATC
AGATTTGCAGCTCCTGGATAATTGCTTGATTCTCTCCAGAGACTGTCAATATTGCATTCATTGC
CATCACCAATAAATCATTGCTTTTGTTCAGATGGTATCAATAGTGTTTCTATTGTAATCTTGTT
ACATGCAATTGTAAATAAAAGTCACTACTTTTGCCAAGCTTAAAATTTTGTCATTTATATAGTA
TTTTCCCTTACCTTTTATTTGGAAATTATTCAGCTTCTGATTTTAGGAGAGACAAGTATCTGGT
AGCATATCATTTGAAAGCTAGTTTCTCTTTTTAGAGGAACAAAACTGTTGTAGGGAATTAAGGA
GTATATGTGTACATACACATATACAGGCACATAGAACAAATGATTTTGATAAATAAACTTGAAT
AGCTAACCAAGTAGAAAAGAATACTGACTTACATTTTTATTAAAAGACATTAGAGTACTTGGGC
AAAAGAAGTTACTCAAGTTGGAAACTATCAGAAATAAATAGGTTCAATGAGATTGAACTACTCT
TACCTAGAACTGTTAATTAGCCTACACATTCTCATGCCAGGATTTTAATCCCTTCTGAATAAAT
GTTAAACGTTTGAGTTAGCCATTTTCTTTACCAAAGGACGAGTGTTGAATTCAGACAGTTGGGA
AAAATATAGGACAGTGAACTCCTGAAAAAATAGAAATCATTATATTTAATTCAGTACCATCTGA
TTATAAAAACGTATTAATGTACAGAGAATATGATTTAAGTTTGAAAATGAATTGACCAAGTGTT
TATATGTAAGATGCTTCACAGAAAGCTGGCTGAACAAAACATTTGTTCTTTATTGCTTTTTTTT
TTAAATCTCAAAATTACCTGGAAAGTATTGTATTGGTAAATTTAATTTTTATATTTTGAAGTGT
TTTAAAAATTTAATATTTTAAAAATACTAAGACTCTAACTTGTGATTCAGTTAGTGCATTTGAG
GACATTCTGTCTAAAGAAAAACAAATACTGTTTGCCCTTGGGAGATCAATGTATTTATACATGA
TTATGAAAAAATCTGTGTGTAAGTTTTAGTGTTGAAGTGGTCACTTTCTGAAATCCGAGTGTCA
TTAATGTTTTAGTTCATTTGTATGTGCACACAGTAACCGTGGTGATGTCTCTATTTTATGTATT
TCACAGTTTTCTTGCCTTGGGTCGAGTGGTGGCAGAAGTGCAAAAATAAAAGTTTATAACAATC
CAAA

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Protein Sequences


Protein RefSeqs	XP_005373026	(Get FASTA)	NCBI Sequence Viewer
	XP_005373027	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000014012
	ENSCLAP00000014012.1

RefSeq Acc Id:

XP_005373026 ⟸ XM_005372969

- Peptide Label:

isoform X1

- Sequence:

show sequence

MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQC
QGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDPGSNEDTDIPKGYMDLMP
FINKAGCECLNESDEHGFDNCLRKDMTFLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQGPK
YVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQNVNSVTIFVQSNQGEEE
TTRISYFTFIGTPVQATNMNDFKRRMHIGKLRVINL

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RefSeq Acc Id:	XP_005373027 ⟸ XM_005372970
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2VFS6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQC QGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDPGSNEDTDIPKGYMDLMP FINKAGCECLNESDEHGFDNCLRKDMTFLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQGPK YVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQNVNSVTIFVQSNQGEEE TTRISYFTFIGTPVQATNMNDFKRVVGKKGESH hide sequence

RefSeq Acc Id:

ENSCLAP00000014012 ⟸ ENSCLAT00000014169

Protein Domains

PITH

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000009681	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000014169	ENTREZGENE
	ENSCLAT00000014169.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.120.470	UniProtKB/TrEMBL
	Glutaredoxin	UniProtKB/TrEMBL
InterPro	Galactose-bd-like_sf	UniProtKB/TrEMBL
	PITH_dom	UniProtKB/TrEMBL
	PITH_dom_sf	UniProtKB/TrEMBL
	Thioredoxin-like_sf	UniProtKB/TrEMBL
	Thioredoxin_CS	UniProtKB/TrEMBL
	Thioredoxin_domain	UniProtKB/TrEMBL
NCBI Gene	Txnl1	ENTREZGENE
PANTHER	THIOREDOXIN-LIKE PROTEIN 1	UniProtKB/TrEMBL
	THIOREDOXIN-LIKE PROTEIN 1	UniProtKB/TrEMBL
Pfam	PITH	UniProtKB/TrEMBL
	Thioredoxin	UniProtKB/TrEMBL
PROSITE	PITH	UniProtKB/TrEMBL
	THIOREDOXIN_1	UniProtKB/TrEMBL
Superfamily-SCOP	SSF49785	UniProtKB/TrEMBL
	SSF52833	UniProtKB/TrEMBL
UniProt	A0A8C2VFS6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-16	Txnl1	thioredoxin like 1		thioredoxin-like 1	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar