Rpl18 (ribosomal protein L18) - Rat Genome Database

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Gene: Rpl18 (ribosomal protein L18) Chinchilla lanigera
Analyze
Symbol: Rpl18
Name: ribosomal protein L18
RGD ID: 8821070
Description: ENCODES a protein that exhibits structural constituent of ribosome (ortholog); INVOLVED IN cytoplasmic translation (ortholog); liver regeneration (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH Diamond-Blackfan anemia 18 (ortholog); Disease Progression (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); cytosolic large ribosomal subunit (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L18
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555591,930,614 - 1,933,037 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555591,929,643 - 1,933,077 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rpl18
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555591,930,614 - 1,933,037 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555591,929,643 - 1,933,077 (+)NCBIChiLan1.0ChiLan1.0
RPL18
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381948,615,331 - 48,619,178 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1948,615,328 - 48,619,184 (-)EnsemblGRCh38hg38GRCh38
GRCh371949,118,588 - 49,122,435 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361953,810,400 - 53,814,245 (-)NCBINCBI36Build 36hg18NCBI36
Build 341953,810,400 - 53,814,245NCBI
Celera1945,983,453 - 45,987,298 (-)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1945,497,774 - 45,501,866 (-)NCBIHuRef
CHM1_11949,120,459 - 49,124,550 (-)NCBICHM1_1
T2T-CHM13v2.01951,609,800 - 51,613,662 (-)NCBIT2T-CHM13v2.0
Rpl18
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39745,364,891 - 45,370,255 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl745,364,881 - 45,370,260 (+)EnsemblGRCm39 Ensembl
GRCm38745,715,467 - 45,720,835 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl745,715,457 - 45,720,836 (+)EnsemblGRCm38mm10GRCm38
MGSCv37752,973,441 - 52,976,205 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36745,586,113 - 45,588,877 (+)NCBIMGSCv36mm8
MGSCv361197,001,760 - 97,002,425 (+)NCBIMGSCv36mm8
Celera741,180,612 - 41,183,376 (+)NCBICelera
Cytogenetic Map7B3NCBI
cM Map729.45NCBI
Rpl18
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81105,325,269 - 105,327,911 (+)NCBIGRCr8
mRatBN7.2196,188,811 - 96,191,452 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl196,188,112 - 96,191,452 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1101,574,246 - 101,576,887 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01110,046,944 - 110,049,585 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01103,337,321 - 103,339,962 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01101,700,910 - 101,703,551 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1101,701,975 - 101,703,550 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01102,779,742 - 102,782,383 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4196,186,553 - 96,189,194 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1196,265,737 - 96,267,304 (+)NCBI
Celera190,442,010 - 90,444,651 (+)NCBICelera
Cytogenetic Map1q22NCBI
RPL18
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22054,720,714 - 54,724,737 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11956,647,054 - 56,650,980 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01945,617,033 - 45,620,954 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11954,209,224 - 54,213,293 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1954,209,173 - 54,213,293 (-)Ensemblpanpan1.1panPan2
RPL18
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11107,690,021 - 107,694,586 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1107,688,074 - 107,694,596 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1107,211,515 - 107,216,012 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01108,214,085 - 108,218,589 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1108,212,137 - 108,218,599 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11107,880,621 - 107,885,114 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01107,527,916 - 107,532,404 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01108,363,625 - 108,368,119 (+)NCBIUU_Cfam_GSD_1.0
Rpl18
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934921,046,894 - 21,050,552 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366642,665,084 - 2,668,706 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL18
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl653,974,309 - 53,978,544 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1653,974,353 - 53,978,681 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2649,641,378 - 49,645,068 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPL18
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366607321,734,896 - 21,738,778 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl18
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248325,254,263 - 5,257,865 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000019614   ⟹   ENSCLAP00000019422
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555591,930,614 - 1,933,037 (+)Ensembl
RefSeq Acc Id: XM_005412947   ⟹   XP_005413004
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555591,929,643 - 1,933,077 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005413004 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000019422
  ENSCLAP00000019422.1
Reference Protein Sequences
RefSeq Acc Id: XP_005413004   ⟸   XM_005412947
- UniProtKB: A0A8C2YS70 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000019422   ⟸   ENSCLAT00000019614
Protein Domains
Large ribosomal subunit protein uL15/eL18


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000013325 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000019614 ENTREZGENE
  ENSCLAT00000019614.1 UniProtKB/TrEMBL
Gene3D-CATH 3.100.10.10 UniProtKB/TrEMBL
InterPro L18e/L15P_sf UniProtKB/TrEMBL
  Ribosomal_L18/L18-A/B/e_CS UniProtKB/TrEMBL
  Ribosomal_L18e UniProtKB/TrEMBL
  Ribosomal_L18e/L15P UniProtKB/TrEMBL
NCBI Gene Rpl18 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L18 UniProtKB/TrEMBL
  PTHR10934 UniProtKB/TrEMBL
Pfam Ribosomal_L18 UniProtKB/TrEMBL
PROSITE RIBOSOMAL_L18E UniProtKB/TrEMBL
Superfamily-SCOP SSF52080 UniProtKB/TrEMBL
UniProt A0A8C2YS70 ENTREZGENE, UniProtKB/TrEMBL