Sdhaf1 (succinate dehydrogenase complex assembly factor 1) - Rat Genome Database

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Gene: Sdhaf1 (succinate dehydrogenase complex assembly factor 1) Chinchilla lanigera
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Symbol: Sdhaf1
Name: succinate dehydrogenase complex assembly factor 1
RGD ID: 8820474
Description: INVOLVED IN mitochondrial respiratory chain complex II assembly (ortholog); ASSOCIATED WITH Brugada syndrome 5 (ortholog); genetic disease (ortholog); hereditary spastic paraplegia 75 (ortholog); FOUND IN mitochondrion (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: succinate dehydrogenase assembly factor 1, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554682,591,208 - 2,591,564 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554682,590,592 - 2,591,669 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Sdhaf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554682,591,208 - 2,591,564 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554682,590,592 - 2,591,669 (-)NCBIChiLan1.0ChiLan1.0
SDHAF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381935,995,188 - 35,996,312 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1935,995,188 - 35,996,312 (+)EnsemblGRCh38hg38GRCh38
GRCh371936,486,090 - 36,487,214 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361941,177,941 - 41,179,054 (+)NCBINCBI36Build 36hg18NCBI36
Celera1933,200,270 - 33,201,400 (+)NCBICelera
Cytogenetic Map19q13.12NCBI
HuRef1932,991,372 - 32,992,502 (+)NCBIHuRef
CHM1_11936,487,451 - 36,488,581 (+)NCBICHM1_1
T2T-CHM13v2.01938,540,986 - 38,542,110 (+)NCBIT2T-CHM13v2.0
Sdhaf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39730,020,834 - 30,021,800 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl730,020,831 - 30,023,320 (-)EnsemblGRCm39 Ensembl
GRCm38730,321,409 - 30,322,375 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl730,321,406 - 30,323,895 (-)EnsemblGRCm38mm10GRCm38
MGSCv37731,106,428 - 31,107,394 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36730,030,500 - 30,032,232 (+)NCBIMGSCv36mm8
Celera724,917,542 - 24,918,508 (-)NCBICelera
Cytogenetic Map7B1NCBI
cM Map717.39NCBI
Sdhaf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8194,703,662 - 94,704,611 (-)NCBIGRCr8
mRatBN7.2185,576,207 - 85,577,156 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl185,576,626 - 85,577,203 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl185,576,041 - 85,577,366 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx190,992,347 - 90,993,296 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0199,460,527 - 99,461,476 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0192,750,608 - 92,751,557 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0188,779,476 - 88,780,425 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl190,948,976 - 90,949,332 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl188,779,478 - 88,780,425 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0192,086,132 - 92,087,081 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4185,267,790 - 85,268,761 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera179,950,045 - 79,950,994 (-)NCBICelera
Cytogenetic Map1q21NCBI
SDHAF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22041,993,783 - 41,994,974 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11943,977,984 - 43,979,175 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01932,911,720 - 32,912,893 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11941,660,094 - 41,661,261 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1941,660,221 - 41,660,568 (+)Ensemblpanpan1.1panPan2
SDHAF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11116,688,153 - 116,689,278 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1116,688,808 - 116,689,164 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1116,093,882 - 116,094,987 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01117,291,305 - 117,292,410 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1117,289,181 - 117,292,423 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11116,855,323 - 116,856,465 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01116,478,868 - 116,479,973 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01117,534,093 - 117,535,198 (-)NCBIUU_Cfam_GSD_1.0
Sdhaf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934911,262,525 - 11,263,666 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493692232,759 - 33,115 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493692232,655 - 33,795 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SDHAF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl645,375,288 - 45,377,965 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1645,374,714 - 45,376,346 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2640,777,318 - 40,779,024 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SDHAF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1630,906,458 - 30,907,934 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl630,906,916 - 30,907,263 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660738,701,200 - 8,702,359 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sdhaf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479410,261,555 - 10,261,911 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479410,261,448 - 10,263,410 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000026224   ⟹   ENSCLAP00000025919
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554682,591,208 - 2,591,564 (-)Ensembl
RefSeq Acc Id: XM_005399939   ⟹   XP_005399996
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554682,590,592 - 2,591,669 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005399996 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000025919
  ENSCLAP00000025919.1
RefSeq Acc Id: XP_005399996   ⟸   XM_005399939
- UniProtKB: A0A8C2W8M3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000025919   ⟸   ENSCLAT00000026224
Protein Domains
Complex 1 LYR protein


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000018050 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000026224 ENTREZGENE
  ENSCLAT00000026224.1 UniProtKB/TrEMBL
InterPro Complex1_LYR_dom UniProtKB/TrEMBL
  Complex1_LYR_SDHAF1_LYRM8 UniProtKB/TrEMBL
NCBI Gene Sdhaf1 ENTREZGENE
PANTHER SUCCINATE DEHYDROGENASE ASSEMBLY FACTOR 1, MITOCHONDRIAL UniProtKB/TrEMBL
  SUCCINATE DEHYDROGENASE ASSEMBLY FACTOR 1, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam Complex1_LYR UniProtKB/TrEMBL
UniProt A0A8C2W8M3 ENTREZGENE, UniProtKB/TrEMBL