Atp8a1 (ATPase phospholipid transporting 8A1) - Rat Genome Database
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Gene: Atp8a1 (ATPase phospholipid transporting 8A1) Chinchilla lanigera
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Symbol: Atp8a1
Name: ATPase phospholipid transporting 8A1
RGD ID: 8820256
Description: ENCODES a protein that exhibits ATPase activity (ortholog); flippase activity (ortholog); phosphatidylserine flippase activity (ortholog); INVOLVED IN aminophospholipid translocation (ortholog); learning (ortholog); lipid transport (ortholog); FOUND IN cytoplasmic vesicle (ortholog); endoplasmic reticulum (ortholog); Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1; phospholipid-transporting ATPase IA
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554435,142,049 - 5,362,147 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554435,142,049 - 5,362,031 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References


Genomics

Comparative Map Data
Atp8a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554435,142,049 - 5,362,147 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554435,142,049 - 5,362,031 (+)NCBIChiLan1.0ChiLan1.0
ATP8A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl442,408,373 - 42,657,105 (-)EnsemblGRCh38hg38GRCh38
GRCh38442,408,373 - 42,657,105 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37442,410,390 - 42,659,122 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36442,105,147 - 42,353,879 (-)NCBINCBI36hg18NCBI36
Build 34442,255,562 - 42,499,818NCBI
Celera442,858,235 - 43,107,011 (-)NCBI
Cytogenetic Map4p13NCBI
HuRef441,731,596 - 41,980,330 (-)NCBIHuRef
CHM1_1442,410,660 - 42,659,431 (-)NCBICHM1_1
Atp8a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39567,775,482 - 68,004,822 (-)NCBIGRCm39mm39
GRCm38567,618,139 - 67,847,484 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl567,618,140 - 67,847,434 (-)EnsemblGRCm38mm10GRCm38
MGSCv37568,009,379 - 68,238,670 (-)NCBIGRCm37mm9NCBIm37
MGSCv36567,897,275 - 68,126,566 (-)NCBImm8
Celera564,913,563 - 65,141,756 (-)NCBICelera
Cytogenetic Map5C3.1NCBI
Atp8a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21440,315,013 - 40,557,572 (+)NCBI
Rnor_6.0 Ensembl1442,015,347 - 42,206,311 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01441,972,398 - 42,210,555 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01441,770,273 - 42,007,304 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41442,923,309 - 43,165,666 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11442,961,030 - 43,105,186 (+)NCBI
Celera1439,507,549 - 39,715,322 (+)NCBICelera
Cytogenetic Map14p11NCBI
ATP8A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1442,577,993 - 42,826,610 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl442,582,538 - 42,826,446 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0436,729,820 - 36,978,825 (-)NCBIMhudiblu_PPA_v0panPan3
ATP8A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1339,368,470 - 39,588,885 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11339,366,692 - 39,588,879 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Atp8a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049364829,562,214 - 9,778,494 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP8A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl833,387,590 - 33,638,841 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1833,384,493 - 33,637,299 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2835,180,910 - 35,309,833 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP8A1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1277,667,704 - 7,933,337 (+)NCBI
ChlSab1.1 Ensembl277,667,781 - 7,933,325 (+)Ensembl
Atp8a1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476124,285,317 - 24,508,837 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000003423   ⟹   ENSCLAP00000003356
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554435,142,049 - 5,362,147 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000003424   ⟹   ENSCLAP00000003357
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554435,142,049 - 5,362,147 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000003425   ⟹   ENSCLAP00000003358
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554435,142,049 - 5,362,031 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000003426   ⟹   ENSCLAP00000003359
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554435,142,161 - 5,204,716 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000003427   ⟹   ENSCLAP00000003360
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554435,170,346 - 5,174,019 (+)Ensembl
RefSeq Acc Id: XM_005391917   ⟹   XP_005391974
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554435,142,049 - 5,357,497 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005391918   ⟹   XP_005391975
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554435,142,049 - 5,362,031 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005391919   ⟹   XP_005391976
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554435,142,049 - 5,357,497 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005391920   ⟹   XP_005391977
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554435,174,060 - 5,362,031 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005391974 (Get FASTA)   NCBI Sequence Viewer  
  XP_005391975 (Get FASTA)   NCBI Sequence Viewer  
  XP_005391976 (Get FASTA)   NCBI Sequence Viewer  
  XP_005391977 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005391976   ⟸   XM_005391919
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005391975   ⟸   XM_005391918
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005391974   ⟸   XM_005391917
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005391977   ⟸   XM_005391920
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSCLAP00000003360   ⟸   ENSCLAT00000003427
RefSeq Acc Id: ENSCLAP00000003358   ⟸   ENSCLAT00000003425
RefSeq Acc Id: ENSCLAP00000003359   ⟸   ENSCLAT00000003426
RefSeq Acc Id: ENSCLAP00000003356   ⟸   ENSCLAT00000003423
RefSeq Acc Id: ENSCLAP00000003357   ⟸   ENSCLAT00000003424


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002403 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000003356 ENTREZGENE
  ENSCLAP00000003357 ENTREZGENE
  ENSCLAP00000003358 ENTREZGENE
Ensembl Transcript ENSCLAT00000003423 ENTREZGENE
  ENSCLAT00000003424 ENTREZGENE
  ENSCLAT00000003425 ENTREZGENE
NCBI Gene Atp8a1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Atp8a1  ATPase phospholipid transporting 8A1    ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1  Symbol and/or name change 5135510 APPROVED