Usp24 (ubiquitin specific peptidase 24) - Rat Genome Database

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Gene: Usp24 (ubiquitin specific peptidase 24) Chinchilla lanigera
Analyze
Symbol: Usp24
Name: ubiquitin specific peptidase 24
RGD ID: 8819848
Description: ASSOCIATED WITH Dwarfism (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ubiquitin carboxyl-terminal hydrolase 24
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554644,283,670 - 4,423,609 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554644,273,068 - 4,423,609 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Usp24
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554644,283,670 - 4,423,609 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554644,273,068 - 4,423,609 (+)NCBIChiLan1.0ChiLan1.0
USP24
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38155,066,359 - 55,215,364 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl155,066,359 - 55,215,378 (-)EnsemblGRCh38hg38GRCh38
GRCh37155,532,032 - 55,681,037 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36155,304,620 - 55,453,350 (-)NCBINCBI36Build 36hg18NCBI36
Build 34155,244,055 - 55,281,666NCBI
Celera153,819,636 - 53,968,611 (-)NCBICelera
Cytogenetic Map1p32.3NCBI
HuRef153,645,063 - 53,793,924 (-)NCBIHuRef
CHM1_1155,648,191 - 55,797,181 (-)NCBICHM1_1
T2T-CHM13v2.0154,947,243 - 55,096,207 (-)NCBIT2T-CHM13v2.0
Usp24
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394106,173,179 - 106,303,798 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4106,173,417 - 106,298,519 (+)EnsemblGRCm39 Ensembl
GRCm384106,315,980 - 106,446,613 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4106,316,213 - 106,441,322 (+)EnsemblGRCm38mm10GRCm38
MGSCv374105,988,818 - 106,113,932 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364105,857,397 - 105,939,259 (+)NCBIMGSCv36mm8
Celera4104,677,381 - 104,802,002 (+)NCBICelera
Cytogenetic Map4C7NCBI
cM Map449.44NCBI
Usp24
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85126,309,396 - 126,439,147 (+)NCBIGRCr8
mRatBN7.25121,080,687 - 121,210,321 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5121,080,470 - 121,210,311 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5123,693,608 - 123,823,365 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05125,416,655 - 125,546,416 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05125,467,907 - 125,597,674 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05125,896,725 - 126,030,411 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5125,896,725 - 126,030,401 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05129,744,154 - 129,877,840 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45127,371,225 - 127,500,521 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15127,359,508 - 127,503,472 (+)NCBI
Celera5119,830,602 - 119,960,008 (+)NCBICelera
Cytogenetic Map5q34NCBI
USP24
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21171,611,601 - 171,760,384 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11170,752,451 - 170,901,077 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0154,349,948 - 54,498,131 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1155,937,971 - 56,085,535 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl155,940,657 - 56,050,660 (-)Ensemblpanpan1.1panPan2
USP24
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1554,086,685 - 54,192,761 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl554,086,685 - 54,190,164 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha554,123,557 - 54,260,293 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0554,242,138 - 54,378,967 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl554,242,153 - 54,376,683 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1554,188,016 - 54,376,151 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0554,129,031 - 54,266,109 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0554,517,506 - 54,654,531 (+)NCBIUU_Cfam_GSD_1.0
Usp24
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505869,145,867 - 69,280,464 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365226,160,680 - 6,267,804 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365226,135,830 - 6,270,414 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
USP24
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6157,220,403 - 157,385,055 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16157,220,521 - 157,385,329 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26145,317,981 - 145,450,656 (+)NCBISscrofa10.2Sscrofa10.2susScr3
USP24
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12077,745,214 - 77,892,109 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2077,782,527 - 77,892,203 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603339,403,052 - 39,551,237 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Usp24
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248624,729,302 - 4,877,788 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248624,729,262 - 4,877,788 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000009674   ⟹   ENSCLAP00000009545
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554644,283,670 - 4,423,609 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000009675   ⟹   ENSCLAP00000009546
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554644,316,301 - 4,421,120 (+)Ensembl
RefSeq Acc Id: XM_005398504   ⟹   XP_005398561
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554644,273,068 - 4,423,609 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013521671   ⟹   XP_013377125
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554644,283,670 - 4,423,609 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013521672   ⟹   XP_013377126
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554644,339,265 - 4,423,609 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005398561 (Get FASTA)   NCBI Sequence Viewer  
  XP_013377125 (Get FASTA)   NCBI Sequence Viewer  
  XP_013377126 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000009545
  ENSCLAP00000009545.1
  ENSCLAP00000009546.1
Reference Protein Sequences
RefSeq Acc Id: XP_005398561   ⟸   XM_005398504
- Peptide Label: isoform X2
- UniProtKB: A0A8C2V938 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013377125   ⟸   XM_013521671
- Peptide Label: isoform X1
- UniProtKB: A0A8C2V6J0 (UniProtKB/TrEMBL),   A0A8C2V938 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013377126   ⟸   XM_013521672
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSCLAP00000009545   ⟸   ENSCLAT00000009674
RefSeq Acc Id: ENSCLAP00000009546   ⟸   ENSCLAT00000009675
Protein Domains
USP


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000006620 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000009674 ENTREZGENE
  ENSCLAT00000009674.1 UniProtKB/TrEMBL
  ENSCLAT00000009675.1 UniProtKB/TrEMBL
Gene3D-CATH Cysteine proteinases UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  Papain-like_cys_pep_sf UniProtKB/TrEMBL
  Peptidase_C19_UCH UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
  UBP24_Ubl UniProtKB/TrEMBL
  USP_CS UniProtKB/TrEMBL
  USP_dom UniProtKB/TrEMBL
NCBI Gene Usp24 ENTREZGENE
PANTHER PTHR24006:SF729 UniProtKB/TrEMBL
  UBIQUITIN CARBOXYL-TERMINAL HYDROLASE UniProtKB/TrEMBL
Pfam UCH UniProtKB/TrEMBL
PROSITE USP_1 UniProtKB/TrEMBL
  USP_2 UniProtKB/TrEMBL
  USP_3 UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
  SSF54001 UniProtKB/TrEMBL
  SSF54236 UniProtKB/TrEMBL
UniProt A0A8C2V6J0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2V938 ENTREZGENE, UniProtKB/TrEMBL