Tsc22d3 (TSC22 domain family member 3) - Rat Genome Database

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Gene: Tsc22d3 (TSC22 domain family member 3) Chinchilla lanigera
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Symbol: Tsc22d3
Name: TSC22 domain family member 3
RGD ID: 8819676
Description: ENCODES a protein that exhibits MRF binding (ortholog); INVOLVED IN body fluid secretion (ortholog); negative regulation of activation-induced cell death of T cells (ortholog); negative regulation of skeletal muscle tissue development (ortholog); ASSOCIATED WITH autistic disorder (ortholog); COVID-19 (ortholog); hyperinsulinism (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: TSC22 domain family protein 3; TSC22 domain family, member 3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554908,177,356 - 8,238,373 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554908,177,356 - 8,238,373 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
nucleus  (ISO)

Molecular Function

References


Genomics

Comparative Map Data
Tsc22d3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554908,177,356 - 8,238,373 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554908,177,356 - 8,238,373 (+)NCBIChiLan1.0ChiLan1.0
TSC22D3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX107,713,221 - 107,777,342 (-)EnsemblGRCh38hg38GRCh38
GRCh38X107,713,221 - 107,777,329 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X106,956,451 - 107,019,218 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X106,843,107 - 106,905,673 (-)NCBINCBI36hg18NCBI36
CeleraX107,427,403 - 107,489,966 (-)NCBI
Cytogenetic MapXq22.3NCBI
HuRefX96,580,831 - 96,643,067 (-)NCBIHuRef
CHM1_1X106,867,386 - 106,929,923 (-)NCBICHM1_1
Tsc22d3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X139,440,277 - 139,501,271 (-)NCBIGRCm39mm39
GRCm39 EnsemblX139,440,277 - 139,501,408 (-)Ensembl
GRCm38X140,539,528 - 140,600,522 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX140,539,528 - 140,600,659 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X137,074,067 - 137,135,061 (-)NCBIGRCm37mm9NCBIm37
MGSCv36X135,885,892 - 135,889,531 (-)NCBImm8
CeleraX123,798,019 - 123,859,465 (-)NCBICelera
Cytogenetic MapXF1NCBI
Tsc22d3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X104,217,898 - 104,277,935 (-)NCBImRatBN7.2
mRatBN7.2 EnsemblX104,217,925 - 104,276,861 (-)Ensembl
Rnor_6.0X111,884,285 - 111,944,693 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX111,884,295 - 111,887,906 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0352,655,031 - 52,715,433 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X128,336,408 - 128,340,027 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1X128,409,842 - 128,413,460 (-)NCBI
Celera343,710,349 - 43,713,973 (+)NCBICelera
Cytogenetic MapXq32NCBI
TSC22D3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X107,179,077 - 107,242,902 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX107,179,077 - 107,242,902 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X96,806,179 - 96,870,020 (-)NCBIMhudiblu_PPA_v0panPan3
TSC22D3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X81,235,489 - 81,298,290 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX81,235,809 - 81,298,192 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX67,355,142 - 67,417,939 (-)NCBI
ROS_Cfam_1.0X82,882,231 - 82,945,043 (-)NCBI
UMICH_Zoey_3.1X80,342,439 - 80,405,260 (-)NCBI
UNSW_CanFamBas_1.0X82,054,298 - 82,117,113 (-)NCBI
UU_Cfam_GSD_1.0X81,846,235 - 81,908,809 (-)NCBI
Tsc22d3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X80,613,791 - 80,680,477 (-)NCBI
SpeTri2.0NW_0049364996,977,924 - 7,044,173 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TSC22D3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX88,171,329 - 88,233,964 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X88,171,325 - 88,233,583 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X102,611,634 - 102,673,219 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TSC22D3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X95,535,798 - 95,606,309 (-)NCBI
Vero_WHO_p1.0NW_02366606520,659,327 - 20,723,753 (-)NCBI
Tsc22d3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248038,701,348 - 8,762,194 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000002232   ⟹   ENSCLAP00000002186
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554908,177,356 - 8,238,373 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000002233   ⟹   ENSCLAP00000002187
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554908,230,287 - 8,237,069 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000002234   ⟹   ENSCLAP00000002188
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554908,235,043 - 8,237,069 (+)Ensembl
RefSeq Acc Id: XM_005404695   ⟹   XP_005404752
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554908,177,356 - 8,238,373 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005404752 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005404752   ⟸   XM_005404695
- Sequence:
RefSeq Acc Id: ENSCLAP00000002186   ⟸   ENSCLAT00000002232
RefSeq Acc Id: ENSCLAP00000002188   ⟸   ENSCLAT00000002234
RefSeq Acc Id: ENSCLAP00000002187   ⟸   ENSCLAT00000002233


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000001579 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000002186 ENTREZGENE
Ensembl Transcript ENSCLAT00000002232 ENTREZGENE
NCBI Gene Tsc22d3 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Tsc22d3  TSC22 domain family member 3    TSC22 domain family, member 3  Symbol and/or name change 5135510 APPROVED