Lrrc3c (leucine rich repeat containing 3C)

Gene: Lrrc3c (leucine rich repeat containing 3C) Chinchilla lanigera

Analyze

Symbol:

Lrrc3c

Name:

leucine rich repeat containing 3C

RGD ID:

8819364

Description:

ASSOCIATED WITH genetic disease (ortholog); hypertrophic cardiomyopathy 25 (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

leucine-rich repeat-containing protein 3C

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955451	14,644,305 - 14,649,084 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955451	14,644,464 - 14,647,078 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

hypertrophic cardiomyopathy 25 (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Lrrc3c
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955451	14,644,305 - 14,649,084 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955451	14,644,464 - 14,647,078 (+)	NCBI	ChiLan1.0	ChiLan1.0

LRRC3C
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	39,927,732 - 39,944,999 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	39,927,732 - 39,944,999 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	38,083,985 - 38,101,252 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Celera	17	34,757,993 - 34,761,247 (+)	NCBI		Celera
Cytogenetic Map	17	q21.1	NCBI
HuRef	17	33,891,729 - 33,894,989 (+)	NCBI		HuRef
CHM1_1	17	38,333,429 - 38,336,689 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	40,791,446 - 40,808,715 (+)	NCBI		T2T-CHM13v2.0

Lrrc3c
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	98,489,117 - 98,490,412 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	98,489,117 - 98,490,412 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	98,598,291 - 98,599,586 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	98,598,291 - 98,599,586 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	98,460,262 - 98,460,810 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	98,414,909 - 98,415,676 (+)	NCBI		MGSCv36	mm8
Celera	11	108,253,349 - 108,253,897 (+)	NCBI		Celera
Cytogenetic Map	11	D	NCBI
cM Map	11	62.12	NCBI

Lrrc3c
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	84,104,722 - 84,107,913 (+)	NCBI		GRCr8
mRatBN7.2	10	83,608,797 - 83,610,128 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	83,608,483 - 83,611,646 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	88,552,256 - 88,553,589 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	88,050,333 - 88,051,666 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	83,443,026 - 83,444,359 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	86,554,761 - 86,565,800 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	86,564,928 - 86,565,695 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	86,360,624 - 86,362,092 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	87,422,134 - 87,422,901 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	82,346,858 - 82,358,420 (+)	NCBI		Celera
Cytogenetic Map	10	q31	NCBI

LRRC3C
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	25,008,224 - 25,027,378 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	26,903,050 - 26,922,994 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	17,344,449 - 17,347,977 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	17,563,906 - 17,567,160 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	17,563,906 - 17,567,160 (-)	Ensembl	panpan1.1		panPan2

LRRC3C
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	22,581,358 - 22,596,646 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	22,581,615 - 22,582,436 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1 Ensembl	9	22,581,615 - 22,582,436 (-)	NCBI	CanFam3.1		canFam3	CanFam3.1
ROS_Cfam_1.0	9	23,374,231 - 23,375,222 (-)	NCBI		ROS_Cfam_1.0
UU_Cfam_GSD_1.0	9	22,531,121 - 22,532,111 (-)	NCBI		UU_Cfam_GSD_1.0

Lrrc3c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	21,985,342 - 21,986,943 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936490	15,088,079 - 15,089,797 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936490	15,088,555 - 15,090,587 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LRRC3C
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	22,398,853 - 22,399,617 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	22,398,463 - 22,409,382 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	22,856,686 - 22,867,632 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LRRC3C
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	66,222,782 - 66,241,944 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666077	37,135,419 - 37,137,004 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lrrc3c
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624795	3,198,477 - 3,199,584 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624795	3,196,900 - 3,200,396 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005394332	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005394333	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005394334	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005394335	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01043564	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDK01099220	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000021042 ⟹ ENSCLAP00000020842

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955451	14,644,305 - 14,649,084 (+)	Ensembl

RefSeq Acc Id:

XM_005394332 ⟹ XP_005394389

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955451	14,644,464 - 14,647,078 (+)	NCBI

Sequence:

show sequence

CTCTCTGCTTCTCAGGCATGAGGAAGCGTTCGAAGTGCCAACCTGTGTGCCCCAGTCTCCACTA
TAAAGAGCATAAAGTCAGCCGGAAAACTCTGCGCTCCAGAACGTCGCTCCTAGGGGCACCCCGC
GACCCATCGCACGAACAAACGAAATTTGAGCCACAGCGCCCCCTGGCGGAAAGTGGGTCCGCAC
TGCGCGGCGCCGGATGGGGTCCTCTCCAGAGAGGGGTTTTCCTGGGCCCTGGCGCCCCGAAGTG
AAGCCCGAGGCTGGAGGCAATGGCTGGAGACGCCCCCGACCCCGGGCTGCTCCCCACCTCCCGC
CTGCACGCAGCGACTGCAGCCCAGCCAGGCTCGCGAGGTAGGGAGGTCCTGCGACGCGGTCTCG
GATGATGGAAGATGACAGACTGGCTTGGGACGCAGAGCCCAAGGCGGGGACGGAACCGGGCCTC
GGCTGCCAGCACCGCGGTCACCAGGTCCAGCGTCTGCTCTTAGCATCACCTGGCCAAGCCACGG
CTCAGGGAAATCAGTCCACGGGCAGAGGCAGAAGCTTAGGAGCCCGCAGACCCAGAGTCAGTTG
GACCAAGAGACCCCCTAGATCAGCCTTCCCAGACCCACAGAGCCCAAGTCTCCAGCCCGGGAGA
CTCTTTACCCAGAGCCCTGCACGAAGAGGGACCCTCAGGAGGAAATCCCGCGCCCCTCCAGGAC
GATGCCTGTGTGCAGCCATGCTCCTCCCAGCTGCTCACCTCCTGCCCCTCCTGCTGGTGATAGG
CGCAAGGGAGGCCGTGCCCAGCGCCCAGTCACCTCCCCACGGCTGCTACGTGGCAGAGGAAGCC
GGTGAGCGGACCTTCCGCTGCAGCCGGGCAGGCCTGAGCGCTGTGCCCCCAGGCATCCCCAACG
ACACCCGCAAGCTCTACCTGGATGCCAACCGGCTGGCGTCAGTGCCTGCCGGCGCCTTCCAGCA
CCTGGCCATCCTGGAGGAGCTGGATCTGTCCCACAACGTCCTCGCGCACCTCTCGGGGGCTGCC
TTCCAGGGCCTGGCGGGCACGCTGCGCCACCTTGACCTCTCTGCCAACCAGTTGGCCTCTGTGC
CCGTGGAGGCCTTCATGGGGCTGCAGATCCAAGTGAACCTGTCCGCCAATCCGTGGCACTGCGA
CTGTGCCCTCCAGGAAGTGCTCAGGCAGGTGAGGCTGGCGCCGGGCACAGGGACGGGCATCGTG
TGTGGCTCTGGAGCCCGACCAGACCTCGTGGGGCAGGAGTTCCTGCTGCTGGCCAGGGAGGAAG
AGCTGTGTGGCATGGGGCACGGCGGGGCCCAGCGGAGCACCGACGTGGCCCTGCTGGTCACCAT
GGGGGGCTGGGTGACGCTGGTGGTGGCATATCTGGCCCACTACGTGTGGCAGAACCGCGATGAG
AGCCGGCACCCTCTCAAGCGGGCACCAGTGCTGCCTGTGCGCTCGGAGGACTCGTCCACTGTCA
GCACAGTCCTCTGACAGCCGGGGAGCCCCAGGATCCCAGCCCTGCGCCCACCCCTCTCCTTCCT
CTCCTTCGGCTCCTCCTCTGGCTGCCATGAACACCCACTCTCTGTCTCTCTCCCTCTGTCTCTG
TCTTTCTCTCTCTGTTTCTATCTCTCTGTCTCTGTCTCTCTCTCCGTCTCTGTCTGTCTCTCTC
AAACACACACACACCATCACTGGTGTCTGGATTCTAGGGGGGGTTCCTCTGTGCCCGGATTGTG
CTAGACTCAGAGAGCCCAAAGTTCCCAGGTCCAAATTTTGGAGGAGGAGGCAGTGAGAGAGGGA
GGGGACAGGGGTCAAGCTGGAGGCGAGGCCAGAAAGCTGGGGTGCGGCTACATGGAGGACACTG
CGGGTCCCCCTCTGCCTCTCCTGGGGCCCTCCGCTTGGTTCTTACTGACCCCGCTCCTGTGCCT
CTGTTGGGAGCCCTGCGTCCTCTCCCCCACCCCTCTGTCATTTCCTGTGTACCCTGAGGGATTT
CCTGTGCTCAGTCCCTTCCAGCAACAGTGGCCTCCTCTAAGACAGAGCTTAGGATGAGGGCAGA
AGAGCTGGGAGCCTAGAGCTTCGCCAGGCACCTCAATAAAGTCCCTCTTGTGACCGCTCTGA

hide sequence

RefSeq Acc Id:

XM_005394333 ⟹ XP_005394390

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955451	14,644,883 - 14,647,078 (+)	NCBI

Sequence:

show sequence

AGCCCAAGGCGGGGACGGAACCGGGCCTCGGCTGCCAGCACCGCGGTCACCAGGTCCAGCGTCT
GCTCTTAGCATCACCTGGCCAAGCCACGGCTCAGATCCCGCGCCCCTCCAGGACGATGCCTGTG
TGCAGCCATGCTCCTCCCAGCTGCTCACCTCCTGCCCCTCCTGCTGGTGATAGGCGCAAGGGAG
GCCGTGCCCAGCGCCCAGTCACCTCCCCACGGCTGCTACGTGGCAGAGGAAGCCGGTGAGCGGA
CCTTCCGCTGCAGCCGGGCAGGCCTGAGCGCTGTGCCCCCAGGCATCCCCAACGACACCCGCAA
GCTCTACCTGGATGCCAACCGGCTGGCGTCAGTGCCTGCCGGCGCCTTCCAGCACCTGGCCATC
CTGGAGGAGCTGGATCTGTCCCACAACGTCCTCGCGCACCTCTCGGGGGCTGCCTTCCAGGGCC
TGGCGGGCACGCTGCGCCACCTTGACCTCTCTGCCAACCAGTTGGCCTCTGTGCCCGTGGAGGC
CTTCATGGGGCTGCAGATCCAAGTGAACCTGTCCGCCAATCCGTGGCACTGCGACTGTGCCCTC
CAGGAAGTGCTCAGGCAGGTGAGGCTGGCGCCGGGCACAGGGACGGGCATCGTGTGTGGCTCTG
GAGCCCGACCAGACCTCGTGGGGCAGGAGTTCCTGCTGCTGGCCAGGGAGGAAGAGCTGTGTGG
CATGGGGCACGGCGGGGCCCAGCGGAGCACCGACGTGGCCCTGCTGGTCACCATGGGGGGCTGG
GTGACGCTGGTGGTGGCATATCTGGCCCACTACGTGTGGCAGAACCGCGATGAGAGCCGGCACC
CTCTCAAGCGGGCACCAGTGCTGCCTGTGCGCTCGGAGGACTCGTCCACTGTCAGCACAGTCCT
CTGACAGCCGGGGAGCCCCAGGATCCCAGCCCTGCGCCCACCCCTCTCCTTCCTCTCCTTCGGC
TCCTCCTCTGGCTGCCATGAACACCCACTCTCTGTCTCTCTCCCTCTGTCTCTGTCTTTCTCTC
TCTGTTTCTATCTCTCTGTCTCTGTCTCTCTCTCCGTCTCTGTCTGTCTCTCTCAAACACACAC
ACACCATCACTGGTGTCTGGATTCTAGGGGGGGTTCCTCTGTGCCCGGATTGTGCTAGACTCAG
AGAGCCCAAAGTTCCCAGGTCCAAATTTTGGAGGAGGAGGCAGTGAGAGAGGGAGGGGACAGGG
GTCAAGCTGGAGGCGAGGCCAGAAAGCTGGGGTGCGGCTACATGGAGGACACTGCGGGTCCCCC
TCTGCCTCTCCTGGGGCCCTCCGCTTGGTTCTTACTGACCCCGCTCCTGTGCCTCTGTTGGGAG
CCCTGCGTCCTCTCCCCCACCCCTCTGTCATTTCCTGTGTACCCTGAGGGATTTCCTGTGCTCA
GTCCCTTCCAGCAACAGTGGCCTCCTCTAAGACAGAGCTTAGGATGAGGGCAGAAGAGCTGGGA
GCCTAGAGCTTCGCCAGGCACCTCAATAAAGTCCCTCTTGTGACCGCTCTGA

hide sequence

RefSeq Acc Id:

XM_005394334 ⟹ XP_005394391

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955451	14,644,991 - 14,647,078 (+)	NCBI

Sequence:

show sequence

CCTGGGGCCCAAAGTCACAGGCCAGGAAACCCAACACCCTTGGGCCCCGGCCCCCAGCTGCCAG
CTGAGAGCAGCAAACTGGGCTTTGGGGAGGAAGCTCTGCAGAGCCGAGCGACAGGGCAGAGGGC
AGCAGCCGGCAGGGCTCTGCCACAAAAGGGGCCTTACCTGGCCCACTTGGGAGCCACCCAGGCA
GATCCCGCGCCCCTCCAGGACGATGCCTGTGTGCAGCCATGCTCCTCCCAGCTGCTCACCTCCT
GCCCCTCCTGCTGGTGATAGGCGCAAGGGAGGCCGTGCCCAGCGCCCAGTCACCTCCCCACGGC
TGCTACGTGGCAGAGGAAGCCGGTGAGCGGACCTTCCGCTGCAGCCGGGCAGGCCTGAGCGCTG
TGCCCCCAGGCATCCCCAACGACACCCGCAAGCTCTACCTGGATGCCAACCGGCTGGCGTCAGT
GCCTGCCGGCGCCTTCCAGCACCTGGCCATCCTGGAGGAGCTGGATCTGTCCCACAACGTCCTC
GCGCACCTCTCGGGGGCTGCCTTCCAGGGCCTGGCGGGCACGCTGCGCCACCTTGACCTCTCTG
CCAACCAGTTGGCCTCTGTGCCCGTGGAGGCCTTCATGGGGCTGCAGATCCAAGTGAACCTGTC
CGCCAATCCGTGGCACTGCGACTGTGCCCTCCAGGAAGTGCTCAGGCAGGTGAGGCTGGCGCCG
GGCACAGGGACGGGCATCGTGTGTGGCTCTGGAGCCCGACCAGACCTCGTGGGGCAGGAGTTCC
TGCTGCTGGCCAGGGAGGAAGAGCTGTGTGGCATGGGGCACGGCGGGGCCCAGCGGAGCACCGA
CGTGGCCCTGCTGGTCACCATGGGGGGCTGGGTGACGCTGGTGGTGGCATATCTGGCCCACTAC
GTGTGGCAGAACCGCGATGAGAGCCGGCACCCTCTCAAGCGGGCACCAGTGCTGCCTGTGCGCT
CGGAGGACTCGTCCACTGTCAGCACAGTCCTCTGACAGCCGGGGAGCCCCAGGATCCCAGCCCT
GCGCCCACCCCTCTCCTTCCTCTCCTTCGGCTCCTCCTCTGGCTGCCATGAACACCCACTCTCT
GTCTCTCTCCCTCTGTCTCTGTCTTTCTCTCTCTGTTTCTATCTCTCTGTCTCTGTCTCTCTCT
CCGTCTCTGTCTGTCTCTCTCAAACACACACACACCATCACTGGTGTCTGGATTCTAGGGGGGG
TTCCTCTGTGCCCGGATTGTGCTAGACTCAGAGAGCCCAAAGTTCCCAGGTCCAAATTTTGGAG
GAGGAGGCAGTGAGAGAGGGAGGGGACAGGGGTCAAGCTGGAGGCGAGGCCAGAAAGCTGGGGT
GCGGCTACATGGAGGACACTGCGGGTCCCCCTCTGCCTCTCCTGGGGCCCTCCGCTTGGTTCTT
ACTGACCCCGCTCCTGTGCCTCTGTTGGGAGCCCTGCGTCCTCTCCCCCACCCCTCTGTCATTT
CCTGTGTACCCTGAGGGATTTCCTGTGCTCAGTCCCTTCCAGCAACAGTGGCCTCCTCTAAGAC
AGAGCTTAGGATGAGGGCAGAAGAGCTGGGAGCCTAGAGCTTCGCCAGGCACCTCAATAAAGTC
CCTCTTGTGACCGCTCTGA

hide sequence

RefSeq Acc Id:

XM_005394335 ⟹ XP_005394392

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955451	14,644,991 - 14,647,078 (+)	NCBI

Sequence:

show sequence

CCTGGGGCCCAAAGTCACAGGCCAGGAAACCCAACACCCTTGGGCCCCGGCCCCCAGCTGCCAG
CTGAGAGCAGCAAACTGGGCTTTGGGGAGGAAGCTCTGCAGAGCCGAGCGACAGGGCAGAGGGC
AGCAGCCGGCAGGGCTCTGCCACAAAAGGGATCCCGCGCCCCTCCAGGACGATGCCTGTGTGCA
GCCATGCTCCTCCCAGCTGCTCACCTCCTGCCCCTCCTGCTGGTGATAGGCGCAAGGGAGGCCG
TGCCCAGCGCCCAGTCACCTCCCCACGGCTGCTACGTGGCAGAGGAAGCCGGTGAGCGGACCTT
CCGCTGCAGCCGGGCAGGCCTGAGCGCTGTGCCCCCAGGCATCCCCAACGACACCCGCAAGCTC
TACCTGGATGCCAACCGGCTGGCGTCAGTGCCTGCCGGCGCCTTCCAGCACCTGGCCATCCTGG
AGGAGCTGGATCTGTCCCACAACGTCCTCGCGCACCTCTCGGGGGCTGCCTTCCAGGGCCTGGC
GGGCACGCTGCGCCACCTTGACCTCTCTGCCAACCAGTTGGCCTCTGTGCCCGTGGAGGCCTTC
ATGGGGCTGCAGATCCAAGTGAACCTGTCCGCCAATCCGTGGCACTGCGACTGTGCCCTCCAGG
AAGTGCTCAGGCAGGTGAGGCTGGCGCCGGGCACAGGGACGGGCATCGTGTGTGGCTCTGGAGC
CCGACCAGACCTCGTGGGGCAGGAGTTCCTGCTGCTGGCCAGGGAGGAAGAGCTGTGTGGCATG
GGGCACGGCGGGGCCCAGCGGAGCACCGACGTGGCCCTGCTGGTCACCATGGGGGGCTGGGTGA
CGCTGGTGGTGGCATATCTGGCCCACTACGTGTGGCAGAACCGCGATGAGAGCCGGCACCCTCT
CAAGCGGGCACCAGTGCTGCCTGTGCGCTCGGAGGACTCGTCCACTGTCAGCACAGTCCTCTGA
CAGCCGGGGAGCCCCAGGATCCCAGCCCTGCGCCCACCCCTCTCCTTCCTCTCCTTCGGCTCCT
CCTCTGGCTGCCATGAACACCCACTCTCTGTCTCTCTCCCTCTGTCTCTGTCTTTCTCTCTCTG
TTTCTATCTCTCTGTCTCTGTCTCTCTCTCCGTCTCTGTCTGTCTCTCTCAAACACACACACAC
CATCACTGGTGTCTGGATTCTAGGGGGGGTTCCTCTGTGCCCGGATTGTGCTAGACTCAGAGAG
CCCAAAGTTCCCAGGTCCAAATTTTGGAGGAGGAGGCAGTGAGAGAGGGAGGGGACAGGGGTCA
AGCTGGAGGCGAGGCCAGAAAGCTGGGGTGCGGCTACATGGAGGACACTGCGGGTCCCCCTCTG
CCTCTCCTGGGGCCCTCCGCTTGGTTCTTACTGACCCCGCTCCTGTGCCTCTGTTGGGAGCCCT
GCGTCCTCTCCCCCACCCCTCTGTCATTTCCTGTGTACCCTGAGGGATTTCCTGTGCTCAGTCC
CTTCCAGCAACAGTGGCCTCCTCTAAGACAGAGCTTAGGATGAGGGCAGAAGAGCTGGGAGCCT
AGAGCTTCGCCAGGCACCTCAATAAAGTCCCTCTTGTGACCGCTCTGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005394389	(Get FASTA)	NCBI Sequence Viewer
	XP_005394390	(Get FASTA)	NCBI Sequence Viewer
	XP_005394391	(Get FASTA)	NCBI Sequence Viewer
	XP_005394392	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000020842
	ENSCLAP00000020842.1

RefSeq Acc Id:

XP_005394389 ⟸ XM_005394332

- Peptide Label:

isoform X1

- Sequence:

show sequence

MMEDDRLAWDAEPKAGTEPGLGCQHRGHQVQRLLLASPGQATAQGNQSTGRGRSLGARRPRVSW
TKRPPRSAFPDPQSPSLQPGRLFTQSPARRGTLRRKSRAPPGRCLCAAMLLPAAHLLPLLLVIG
AREAVPSAQSPPHGCYVAEEAGERTFRCSRAGLSAVPPGIPNDTRKLYLDANRLASVPAGAFQH
LAILEELDLSHNVLAHLSGAAFQGLAGTLRHLDLSANQLASVPVEAFMGLQIQVNLSANPWHCD
CALQEVLRQVRLAPGTGTGIVCGSGARPDLVGQEFLLLAREEELCGMGHGGAQRSTDVALLVTM
GGWVTLVVAYLAHYVWQNRDESRHPLKRAPVLPVRSEDSSTVSTVL

hide sequence

RefSeq Acc Id:	XP_005394390 ⟸ XM_005394333
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2VYX1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLLPAAHLLPLLLVIGAREAVPSAQSPPHGCYVAEEAGERTFRCSRAGLSAVPPGIPNDTRKLY LDANRLASVPAGAFQHLAILEELDLSHNVLAHLSGAAFQGLAGTLRHLDLSANQLASVPVEAFM GLQIQVNLSANPWHCDCALQEVLRQVRLAPGTGTGIVCGSGARPDLVGQEFLLLAREEELCGMG HGGAQRSTDVALLVTMGGWVTLVVAYLAHYVWQNRDESRHPLKRAPVLPVRSEDSSTVSTVL hide sequence

RefSeq Acc Id:	XP_005394391 ⟸ XM_005394334
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2VYX1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLLPAAHLLPLLLVIGAREAVPSAQSPPHGCYVAEEAGERTFRCSRAGLSAVPPGIPNDTRKLY LDANRLASVPAGAFQHLAILEELDLSHNVLAHLSGAAFQGLAGTLRHLDLSANQLASVPVEAFM GLQIQVNLSANPWHCDCALQEVLRQVRLAPGTGTGIVCGSGARPDLVGQEFLLLAREEELCGMG HGGAQRSTDVALLVTMGGWVTLVVAYLAHYVWQNRDESRHPLKRAPVLPVRSEDSSTVSTVL hide sequence

RefSeq Acc Id:	XP_005394392 ⟸ XM_005394335
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2VYX1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLLPAAHLLPLLLVIGAREAVPSAQSPPHGCYVAEEAGERTFRCSRAGLSAVPPGIPNDTRKLY LDANRLASVPAGAFQHLAILEELDLSHNVLAHLSGAAFQGLAGTLRHLDLSANQLASVPVEAFM GLQIQVNLSANPWHCDCALQEVLRQVRLAPGTGTGIVCGSGARPDLVGQEFLLLAREEELCGMG HGGAQRSTDVALLVTMGGWVTLVVAYLAHYVWQNRDESRHPLKRAPVLPVRSEDSSTVSTVL hide sequence

RefSeq Acc Id:

ENSCLAP00000020842 ⟸ ENSCLAT00000021042

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000014277	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000021042	ENTREZGENE
	ENSCLAT00000021042.1	UniProtKB/TrEMBL
Gene3D-CATH	3.80.10.10	UniProtKB/TrEMBL
InterPro	Leu-rich_rpt	UniProtKB/TrEMBL
	Leu-rich_rpt_typical-subtyp	UniProtKB/TrEMBL
	LRR_dom_sf	UniProtKB/TrEMBL
NCBI Gene	Lrrc3c	ENTREZGENE
PANTHER	KEKKON 5, ISOFORM A	UniProtKB/TrEMBL
	SYNAPTIC ADHESION-LIKE MOLECULE SALM	UniProtKB/TrEMBL
Pfam	LRR_8	UniProtKB/TrEMBL
PROSITE	LRR	UniProtKB/TrEMBL
SMART	LRR_TYP	UniProtKB/TrEMBL
Superfamily-SCOP	L domain-like	UniProtKB/TrEMBL
UniProt	A0A8C2VYX1	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar