Tspo2 (translocator protein 2) - Rat Genome Database
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Gene: Tspo2 (translocator protein 2) Chinchilla lanigera
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Symbol: Tspo2
Name: translocator protein 2
RGD ID: 8819354
Description: ENCODES a protein that exhibits cholesterol binding (ortholog); INVOLVED IN amino acid import across plasma membrane (ortholog); enucleate erythrocyte differentiation (ortholog); import across plasma membrane (ortholog); FOUND IN endoplasmic reticulum (ortholog); organelle membrane (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554377,714,107 - 7,715,796 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554377,714,107 - 7,715,796 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References


Genomics

Comparative Map Data
Tspo2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554377,714,107 - 7,715,796 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554377,714,107 - 7,715,796 (+)NCBIChiLan1.0ChiLan1.0
TSPO2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl641,042,467 - 41,044,337 (+)EnsemblGRCh38hg38GRCh38
GRCh38641,041,344 - 41,044,337 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37641,010,206 - 41,012,076 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36641,118,271 - 41,120,054 (+)NCBINCBI36hg18NCBI36
Celera642,562,918 - 42,564,757 (+)NCBI
Cytogenetic Map6p21.1NCBI
HuRef640,728,196 - 40,730,035 (+)NCBIHuRef
CHM1_1641,012,743 - 41,014,582 (+)NCBICHM1_1
Tspo2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391748,754,970 - 48,758,592 (-)NCBIGRCm39mm39
GRCm39 Ensembl1748,754,935 - 48,758,550 (-)Ensembl
GRCm381748,447,942 - 48,451,564 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1748,447,907 - 48,451,522 (-)EnsemblGRCm38mm10GRCm38
MGSCv371748,587,760 - 48,590,826 (-)NCBIGRCm37mm9NCBIm37
MGSCv361747,914,002 - 47,917,068 (-)NCBImm8
Celera1751,879,974 - 51,883,092 (-)NCBICelera
Cytogenetic Map17CNCBI
Tspo2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2912,544,615 - 12,548,563 (+)NCBI
Rnor_6.0 Ensembl914,513,037 - 14,514,416 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0914,510,378 - 14,514,609 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0913,431,506 - 13,434,734 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera910,319,279 - 10,323,162 (+)NCBICelera
Cytogenetic Map9q12NCBI
TSPO2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1641,939,481 - 41,941,328 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl641,939,481 - 41,941,328 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0640,630,564 - 40,633,028 (+)NCBIMhudiblu_PPA_v0panPan3
TSPO2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl129,795,739 - 9,799,178 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1129,796,421 - 9,799,181 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
TSPO2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl736,347,060 - 36,352,495 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1736,347,027 - 36,352,497 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2741,643,850 - 41,650,992 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TSPO2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11731,112,877 - 31,116,214 (-)NCBI
ChlSab1.1 Ensembl1731,113,081 - 31,114,219 (-)Ensembl
Tspo2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475417,708,347 - 17,710,034 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000017508   ⟹   ENSCLAP00000017339
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554377,714,107 - 7,715,796 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000017509   ⟹   ENSCLAP00000017340
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554377,714,588 - 7,715,454 (+)Ensembl
RefSeq Acc Id: XM_005389665   ⟹   XP_005389722
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554377,714,107 - 7,715,796 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005389666   ⟹   XP_005389723
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554377,714,107 - 7,715,796 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005389722 (Get FASTA)   NCBI Sequence Viewer  
  XP_005389723 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005389722   ⟸   XM_005389665
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005389723   ⟸   XM_005389666
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000017340   ⟸   ENSCLAT00000017509
RefSeq Acc Id: ENSCLAP00000017339   ⟸   ENSCLAT00000017508


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011909 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000017339 ENTREZGENE
Ensembl Transcript ENSCLAT00000017508 ENTREZGENE
NCBI Gene Tspo2 ENTREZGENE