Cep164 (centrosomal protein 164) - Rat Genome Database

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Gene: Cep164 (centrosomal protein 164) Chinchilla lanigera
Analyze
Symbol: Cep164
Name: centrosomal protein 164
RGD ID: 8819169
Description: INVOLVED IN cilium assembly (ortholog); ASSOCIATED WITH CD3epsilon deficiency (ortholog); Chromosome 11, Partial Trisomy 11q (ortholog); Dwarfism (ortholog); FOUND IN 9+2 motile cilium (ortholog); apical part of cell (ortholog); centriole (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: centrosomal protein 164kDa; centrosomal protein of 164 kDa
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541218,634,074 - 18,694,346 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541218,627,023 - 18,695,685 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Cep164
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541218,634,074 - 18,694,346 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541218,627,023 - 18,695,685 (+)NCBIChiLan1.0ChiLan1.0
CEP164
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811117,321,778 - 117,413,266 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11117,314,557 - 117,413,266 (+)EnsemblGRCh38hg38GRCh38
GRCh3711117,192,494 - 117,283,982 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611116,703,781 - 116,789,192 (+)NCBINCBI36Build 36hg18NCBI36
Celera11114,356,228 - 114,441,648 (+)NCBICelera
Cytogenetic Map11q23.3NCBI
HuRef11113,126,326 - 113,217,565 (+)NCBIHuRef
CHM1_111117,078,144 - 117,169,637 (+)NCBICHM1_1
T2T-CHM13v2.011117,338,426 - 117,429,915 (+)NCBIT2T-CHM13v2.0
Cep164
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39945,678,244 - 45,739,984 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl945,678,244 - 45,739,989 (-)EnsemblGRCm39 Ensembl
GRCm38945,766,946 - 45,828,686 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl945,766,946 - 45,828,691 (-)EnsemblGRCm38mm10GRCm38
MGSCv37945,575,029 - 45,636,721 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36945,517,724 - 45,579,686 (-)NCBIMGSCv36mm8
Celera943,049,408 - 43,111,380 (-)NCBICelera
Cytogenetic Map9A5.2NCBI
cM Map925.1NCBI
Cep164
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8854,967,621 - 55,031,264 (-)NCBIGRCr8
mRatBN7.2846,070,901 - 46,134,511 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl846,071,076 - 46,134,336 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0850,069,282 - 50,132,477 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl850,070,579 - 50,126,413 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0848,693,534 - 48,757,643 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4848,737,084 - 48,807,528 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera845,653,631 - 45,717,293 (-)NCBICelera
Cytogenetic Map8q22NCBI
CEP164
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29118,017,176 - 118,115,418 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111119,123,280 - 119,220,377 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011112,157,774 - 112,249,004 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111116,096,165 - 116,181,613 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11116,106,847 - 116,180,516 (+)Ensemblpanpan1.1panPan2
CEP164
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1516,227,369 - 16,290,781 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl516,227,292 - 16,291,229 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha516,276,622 - 16,340,023 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0516,168,676 - 16,232,080 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl516,168,677 - 16,232,535 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1516,306,570 - 16,370,026 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0516,209,549 - 16,272,986 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0516,251,809 - 16,315,281 (-)NCBIUU_Cfam_GSD_1.0
Cep164
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494799,623,245 - 99,688,344 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365422,544,665 - 2,609,792 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365422,544,677 - 2,609,753 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CEP164
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl944,670,874 - 44,752,469 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1944,670,857 - 44,752,477 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2949,743,861 - 49,825,467 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CEP164
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11108,690,196 - 108,787,175 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1108,701,884 - 108,790,678 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604317,267,500 - 17,353,051 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cep164
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478412,773,870 - 12,836,107 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478412,754,685 - 12,837,440 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000024082   ⟹   ENSCLAP00000023856
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541218,634,074 - 18,694,346 (+)Ensembl
RefSeq Acc Id: XM_005378211   ⟹   XP_005378268
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541218,627,023 - 18,695,685 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005378212   ⟹   XP_005378269
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541218,627,023 - 18,695,685 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005378213   ⟹   XP_005378270
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541218,627,023 - 18,695,685 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005378215   ⟹   XP_005378272
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541218,627,023 - 18,695,685 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005378216   ⟹   XP_005378273
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541218,627,023 - 18,695,685 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005378217   ⟹   XP_005378274
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541218,651,809 - 18,695,685 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013511149   ⟹   XP_013366603
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541218,627,023 - 18,695,685 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013511151   ⟹   XP_013366605
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541218,627,023 - 18,695,685 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005378268   ⟸   XM_005378211
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005378269   ⟸   XM_005378212
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005378272   ⟸   XM_005378215
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_005378270   ⟸   XM_005378213
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005378273   ⟸   XM_005378216
- Peptide Label: isoform X6
- UniProtKB: A0A8C2W6F1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005378274   ⟸   XM_005378217
- Peptide Label: isoform X7
- UniProtKB: A0A8C2W6F1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013366603   ⟸   XM_013511149
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013366605   ⟸   XM_013511151
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSCLAP00000023856   ⟸   ENSCLAT00000024082
Protein Domains
WW


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000016376 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000024082 ENTREZGENE
  ENSCLAT00000024082.1 UniProtKB/TrEMBL
Gene3D-CATH Photosystem I PsaD, reaction center subunit II UniProtKB/TrEMBL
InterPro WW_dom UniProtKB/TrEMBL
  WW_dom_sf UniProtKB/TrEMBL
NCBI Gene Cep164 ENTREZGENE
PANTHER CENTROSOMAL PROTEIN OF 164 KDA UniProtKB/TrEMBL
  NUCLEAR MITOTIC APPARATUS PROTEIN 1-RELATED UniProtKB/TrEMBL
Pfam PF00397 UniProtKB/TrEMBL
PROSITE WW_DOMAIN_1 UniProtKB/TrEMBL
  WW_DOMAIN_2 UniProtKB/TrEMBL
SMART SM00456 UniProtKB/TrEMBL
Superfamily-SCOP SSF51045 UniProtKB/TrEMBL
UniProt A0A8C2W6F1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Cep164  centrosomal protein 164    centrosomal protein 164kDa  Symbol and/or name change 5135510 APPROVED