Tgfb1i1 (transforming growth factor beta 1 induced transcript 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Tgfb1i1 (transforming growth factor beta 1 induced transcript 1) Chinchilla lanigera
Analyze
Symbol: Tgfb1i1
Name: transforming growth factor beta 1 induced transcript 1
RGD ID: 8818532
Description: ENCODES a protein that exhibits I-SMAD binding (ortholog); nuclear androgen receptor binding (ortholog); Roundabout binding (ortholog); INVOLVED IN cell fate commitment (ortholog); epithelial cell differentiation (ortholog); fat cell differentiation (ortholog); ASSOCIATED WITH branched-chain keto acid dehydrogenase kinase deficiency (ortholog); genetic disease (ortholog); FOUND IN cytosol (ortholog); focal adhesion (ortholog); intracellular membrane-bounded organelle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554938,309,505 - 8,315,668 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554938,309,480 - 8,315,378 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Tgfb1i1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554938,309,505 - 8,315,668 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554938,309,480 - 8,315,378 (+)NCBIChiLan1.0ChiLan1.0
TGFB1I1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381631,472,152 - 31,477,960 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1631,471,585 - 31,477,960 (+)EnsemblGRCh38hg38GRCh38
GRCh371631,483,473 - 31,489,281 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361631,390,985 - 31,396,781 (+)NCBINCBI36Build 36hg18NCBI36
Build 341631,392,026 - 31,396,781NCBI
Celera1628,819,110 - 28,824,915 (-)NCBICelera
Cytogenetic Map16p11.2NCBI
HuRef1629,043,677 - 29,049,482 (+)NCBIHuRef
CHM1_11632,802,125 - 32,807,930 (+)NCBICHM1_1
T2T-CHM13v2.01631,859,540 - 31,865,348 (+)NCBIT2T-CHM13v2.0
Tgfb1i1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397127,845,963 - 127,852,884 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7127,845,984 - 127,854,871 (+)EnsemblGRCm39 Ensembl
GRCm387128,246,812 - 128,255,699 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7128,246,812 - 128,255,699 (+)EnsemblGRCm38mm10GRCm38
MGSCv377135,390,385 - 135,397,226 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367128,038,019 - 128,044,860 (+)NCBIMGSCv36mm8
Celera7128,082,355 - 128,089,196 (+)NCBICelera
Cytogenetic Map7F3NCBI
cM Map770.07NCBI
Tgfb1i1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81192,258,992 - 192,265,903 (+)NCBIGRCr8
mRatBN7.21182,828,553 - 182,835,465 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1182,828,544 - 182,837,080 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1191,179,152 - 191,185,949 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01198,365,243 - 198,372,040 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01191,035,717 - 191,042,532 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01199,664,039 - 199,670,970 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1199,664,173 - 199,670,961 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01206,710,120 - 206,716,917 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41187,504,715 - 187,511,512 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11187,656,500 - 187,660,841 (+)NCBI
Celera1180,474,643 - 180,481,440 (+)NCBICelera
Cytogenetic Map1q37NCBI
TGFB1I1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21834,677,976 - 34,687,350 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11639,480,365 - 39,488,773 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01623,487,561 - 23,493,452 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11631,842,437 - 31,848,327 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1631,842,437 - 31,848,327 (+)Ensemblpanpan1.1panPan2
TGFB1I1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1616,775,438 - 16,781,695 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl616,775,836 - 16,780,935 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha618,384,792 - 18,390,345 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0616,900,261 - 16,905,818 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl616,890,717 - 16,905,803 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1616,703,863 - 16,709,400 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0616,623,496 - 16,629,008 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0616,935,200 - 16,940,744 (-)NCBIUU_Cfam_GSD_1.0
Tgfb1i1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344125,683,623 - 125,689,224 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365438,347,329 - 8,353,051 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365438,347,343 - 8,352,909 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TGFB1I1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl317,090,116 - 17,099,020 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1317,093,275 - 17,099,204 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TGFB1I1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1528,172,246 - 28,178,265 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660681,261,904 - 1,268,458 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tgfb1i1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478214,471,415 - 14,476,914 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478214,471,427 - 14,476,792 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000014086   ⟹   ENSCLAP00000013930
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554938,309,505 - 8,315,668 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000014087   ⟹   ENSCLAP00000013931
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554938,310,115 - 8,315,668 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000014088   ⟹   ENSCLAP00000013932
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554938,310,717 - 8,315,668 (+)Ensembl
RefSeq Acc Id: XM_005405320   ⟹   XP_005405377
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554938,309,505 - 8,315,378 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005405322   ⟹   XP_005405379
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554938,310,115 - 8,315,378 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013504900   ⟹   XP_013360354
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554938,309,480 - 8,315,378 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013504901   ⟹   XP_013360355
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554938,309,505 - 8,315,378 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013504902   ⟹   XP_013360356
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554938,310,207 - 8,315,378 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013504903   ⟹   XP_013360357
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554938,310,945 - 8,315,378 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005405377   ⟸   XM_005405320
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VDF4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005405379   ⟸   XM_005405322
- Peptide Label: isoform X5
- UniProtKB: A0A8C2VDF2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013360354   ⟸   XM_013504900
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013360355   ⟸   XM_013504901
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013360356   ⟸   XM_013504902
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013360357   ⟸   XM_013504903
- Peptide Label: isoform X4
- UniProtKB: A0A8C2VDC5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000013930   ⟸   ENSCLAT00000014086
RefSeq Acc Id: ENSCLAP00000013931   ⟸   ENSCLAT00000014087
RefSeq Acc Id: ENSCLAP00000013932   ⟸   ENSCLAT00000014088
Protein Domains
LIM zinc-binding


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000009643 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000014086 ENTREZGENE
  ENSCLAT00000014086.1 UniProtKB/TrEMBL
  ENSCLAT00000014087 ENTREZGENE
  ENSCLAT00000014087.1 UniProtKB/TrEMBL
  ENSCLAT00000014088 ENTREZGENE
  ENSCLAT00000014088.1 UniProtKB/TrEMBL
Gene3D-CATH Cysteine Rich Protein UniProtKB/TrEMBL
InterPro Paxillin_TGFB1I1_LIM_dom1 UniProtKB/TrEMBL
  Tgfb1i1/Leupaxin/TGFB1I1 UniProtKB/TrEMBL
  Znf_LIM UniProtKB/TrEMBL
NCBI Gene Tgfb1i1 ENTREZGENE
PANTHER PDZ AND LIM DOMAIN PROTEIN ZASP UniProtKB/TrEMBL
  PDZ AND LIM DOMAIN PROTEIN ZASP UniProtKB/TrEMBL
Pfam LIM UniProtKB/TrEMBL
  Paxillin UniProtKB/TrEMBL
PIRSF Leupaxin UniProtKB/TrEMBL
PROSITE LIM_DOMAIN_1 UniProtKB/TrEMBL
  LIM_DOMAIN_2 UniProtKB/TrEMBL
SMART LIM UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/TrEMBL
UniProt A0A8C2VDC5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VDF2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VDF4 ENTREZGENE, UniProtKB/TrEMBL