Msantd1 (Myb/SANT DNA binding domain containing 1)

Gene: Msantd1 (Myb/SANT DNA binding domain containing 1) Chinchilla lanigera

Analyze

Symbol:

Msantd1

Name:

Myb/SANT DNA binding domain containing 1

RGD ID:

8817781

Description:

ASSOCIATED WITH cherubism (ortholog); Ellis-Van Creveld syndrome (ortholog); genetic disease (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

Myb/SANT-like DNA-binding domain containing 1; myb/SANT-like DNA-binding domain-containing protein 1

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955514	2,037,891 - 2,053,746 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955514	2,037,891 - 2,053,746 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

cherubism (ISO)

Ellis-Van Creveld syndrome (ISO)

genetic disease (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Msantd1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955514	2,037,891 - 2,053,746 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955514	2,037,891 - 2,053,746 (+)	NCBI	ChiLan1.0	ChiLan1.0

MSANTD1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	3,244,273 - 3,256,613 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	3,244,369 - 3,271,738 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	3,246,096 - 3,258,340 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	3,220,565 - 3,235,638 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	4	3,162,291 - 3,169,866 (+)	NCBI		Celera
Cytogenetic Map	4	p16.3	NCBI
HuRef	4	3,189,248 - 3,196,823 (+)	NCBI		HuRef
CHM1_1	4	3,248,522 - 3,256,097 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	3,243,031 - 3,255,371 (+)	NCBI		T2T-CHM13v2.0

Msantd1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	35,071,581 - 35,084,333 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	35,065,356 - 35,081,183 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	34,914,593 - 34,926,989 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	34,908,012 - 34,923,839 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	35,258,564 - 35,266,488 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	35,232,772 - 35,240,696 (+)	NCBI		MGSCv36	mm8
Celera	5	32,389,812 - 32,397,737 (+)	NCBI		Celera
Cytogenetic Map	5	B2	NCBI
cM Map	5	17.94	NCBI

Msantd1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	80,059,985 - 80,070,336 (-)	NCBI		GRCr8
mRatBN7.2	14	75,832,368 - 75,845,687 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	75,835,380 - 75,844,183 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	80,288,354 - 80,294,546 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	81,529,009 - 81,535,201 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	77,974,245 - 77,980,437 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	81,091,675 - 81,105,065 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	81,090,858 - 81,100,803 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	81,780,150 - 81,793,570 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	81,476,972 - 81,483,164 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	14	74,761,454 - 74,767,646 (-)	NCBI		Celera
Cytogenetic Map	14	q21	NCBI

MSANTD1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	3,587,575 - 3,615,269 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	3,520,980 - 3,548,660 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	3,393,646 - 3,408,820 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	3,292,754 - 3,307,786 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	3,290,354 - 3,305,139 (+)	Ensembl	panpan1.1		panPan2

MSANTD1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	61,058,993 - 61,076,816 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	61,064,335 - 61,075,072 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	63,642,759 - 63,665,797 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	61,534,630 - 61,557,671 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	3	61,536,790 - 61,550,600 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	3	61,026,239 - 61,049,273 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	61,230,547 - 61,253,592 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	61,596,177 - 61,613,334 (-)	NCBI		UU_Cfam_GSD_1.0

Msantd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	66,730,271 - 66,741,262 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936477	20,431,861 - 20,440,848 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936477	20,431,866 - 20,438,330 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MSANTD1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	1,938,397 - 1,947,985 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	1,934,960 - 1,944,754 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	1,590,769 - 1,596,940 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MSANTD1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	27	45,480,897 - 45,490,192 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	27	45,480,545 - 45,491,188 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666051	1,839,654 - 1,852,085 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Msantd1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624755	24,590,334 - 24,597,869 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624755	24,590,378 - 24,602,806 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005408758	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005408760	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013506816	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013506817	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01067071	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01216365	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000011956 ⟹ ENSCLAP00000011818

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955514	2,037,891 - 2,053,746 (+)	Ensembl

RefSeq Acc Id:

ENSCLAT00000011957 ⟹ ENSCLAP00000011819

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955514	2,046,788 - 2,053,746 (+)	Ensembl

RefSeq Acc Id:

ENSCLAT00000011958 ⟹ ENSCLAP00000011820

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955514	2,046,788 - 2,053,746 (+)	Ensembl

RefSeq Acc Id:

XM_005408758 ⟹ XP_005408815

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955514	2,046,788 - 2,053,746 (+)	NCBI

Sequence:

show sequence

TCAGATGTAGGCCCCATTTTGAGCGCGGAGCTGCCTCAAGCAAGCTAGCGTGGTGCCTCCCGCC
CATGGTGCCTGGGCTGGGCCCGAGGCCCCGCCTGAGCGCCGTCCTTAACCCCGCAGGTGCCTCC
AGCATGGCGGCGGCCGAAGTGCCCAGCTACCTTGTGTCTCCTCAGACGGAGAAGCACCGGCGGG
CCCGCAACTGGACGGACGCCGAGATGCGTGGTCTCATGCTTGTCTGGGAGGAGTTCTTCGACGA
GCTCAAGCAGACCAAGCGCAATGCCAAGGTGTACGAGAAGATGGCCAGCAAGCTCTTCGAGATG
ACGGGCGAGCGCCGGCTAGGCGAGGAGATCAAGATCAAAATCACCAACATGACCTTCCAGTACA
GGAAATTAAAATGCATGACAGATAGCGAGTCGGTCCCGCCGGACTGGCCCTATTACCTAGCCAT
TGATAGGATTCTGGCCAAGGTCCCCGAGGCCTCTGAGGGCAAAGTGCCGGACGGCCAGCAGCCG
GGGCCCTCCACGTCCCAGACCGAGGCGTCTCTGTCGCCGTCTGCTAAGTCCACCCCTCTGTACT
TACCGTATACCCAGTGCTCCTATGAAGGCCGCTTCGAGGACGATCGCTCCGACAGCTCCTCCAG
CTTACTGTCCCTTAAGTTCAGGTCAGAGGAGCGTCCCGTGAAGAAGCGCAAGGCACAGAGTGGC
CACCTGCAGAGGAAGAAGTTGCGGCTGCTGGAGGCCATGCTGGAGGAACAGCGGCGGCTGAGCC
GTGCCATGGAGGAGACGTGCCGCGAGGTGCGCCGTGTGCTGGACCAGCAGAACATCCTGCAGGT
GCAGAGCCTGCAGCTGCAGGAGCGCATGATGAGCCTGCTGGAGAAGCTCATCGCCAAGTCTAGT
GGCTAGGCGGGTCAGGCCGCCCTGGGACCTGGGACGCGGCCAGGAGGCCAGGTCACTCCACAGG
AACATCCTAGAGCACTCTCTCCAGGAGTCTCTCTCGGTGATACTCGAAATGGCTTTTGATATTA
AACGTGTACTTTTCAGTATTGCCTGGAAGCAGGATTGGTGCTCTCTGGCTTGGAGGGCTGCACC
AGAGTGATCCCCTGCATGTGACCACAGCTCAGAGGCAGGCGGCCACCATGTGGGGGCCCCTGGC
CAGGAGGCTGCTGTGTCCTCCTCCCCAGCCTCATCCTTGGTGCTGGTGCTGATGTCACCTCCGA
CCTCAACGCAGAGCCCGAGCTGCTTTCCAGCGGCCTTCCCTTTGCCTGGCGGCAGTGCTACTGT
GGCCATAGCCTCCTAGGGCATGTCACTGCACAAGCAGCCACTCCTGTTCTCCCCAACCTGGTAC
TGCAGTGAGCTGAGAAGCAGCCACAGATGGCTGTGAGTGCAGGAAGGGAAGGGATGGCCCGAGG
AGGTGGGGGGAGCCCACCAGGAGGGGGCCACACTAGGGCAGCCCCTACAGTTGCCAGAGGTTGG
GGAGCCAGAGCAGTCCATGGGCAACAGGGAGGGGTGAGCTGCTAGGAGGCATTTTGGTGTCTCC
CTGATGACTGAGAGGGTCTTGGCCACCATGTCTGGATCTGACGTCATGGGCGGACAGGGCTGGG
GTGGGAGCTGCAGCGGCCAGTGTGTTCACCATCTCCATCCTTTTGTTGCTGGCGTTGCAGGGTA
AAATCCCCAGTTCCTACATCCCACAGCCCAGGCTCAGCCACCCATGCCAAAATCCCAGTCAAGG
AGAGAGCAGGGGCGGGGCAAGAAAGGAGTTGTAGCCAGCGTGGCCATGCTGGGGAGCACAGAGC
AGCTCTGATCTGCCCTCCACAGCTGACAGAAGCCTTGGGGTTGTACAGGAAAGGGGAACGAAGG
TGCATTTGGGGTTTGCATAGCTGGCAGGATTAGGTGGTCCTGGGATCTGGCTGGCTGGTGTTCC
GCCCTGATTCTGGGAGGTCCTAGGAGAGCTGCTGTGGCAGGAGGGACACCCTCAGCTCCCTGGC
TGCTCTCCTGGGGGGTGGCCTCATCGTGCGGGTCTGGAAGACAGTGCCATCCTGGAATGGGAGG
GGGCTGCAGGTTCGGGACAGGGGGGTCTAGACCTAGGTATTGTAAAAGCTGGTGGTTAGGGCCA
GGATGTATCTCTGCGGCACAGCGCCTGCCTGGTAAACACGAGGTCCTGTGTTTGATTTCTGGTA
CCAAAAAAAAAAAAAAAAGCTGGTCATTAGATGTCCCTGCAAATCCCTGAAATTAAATCCTGAA
AATTGCTCTA

hide sequence

RefSeq Acc Id:

XM_005408760 ⟹ XP_005408817

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955514	2,037,891 - 2,053,746 (+)	NCBI

Sequence:

show sequence

TTTCTGGGTCCTTGCTGGAGGCTAGCTCCCGCCTGCACCAGTCCTCACTTTGGTTGGTGTCAGT
GTCAGGTTCAGGTGGTGGTGAAAGCTTGGAAACCTACCCTCTGCAGAACCCCATGAGGATAGGA
CAGCATTTGCCAGCCCCAGGGGTGTAAAAGGTTGACAGGGACACAAAACAGGAGGCTCAGCCAT
TGGTAGGCAGGGCTGCCCAGGGTCAAGGCATGCAAGGAGTTGGGGGCTGGGGGTGGAGTGGGGA
GGCAGGGCAGTGGTTGCCTATCTGCTCAGGTTGCCACGCGCACTGCTGGGTTGTTCCACATGCT
GCTTCTCATTAGCTCTTGTCATTGTGCTGTGTTCGCCCTCCTGGGGAGAGGCGTGAGTAAAGAC
CCAGCCCCACCCGCCAGCACTGCTGGCCAGGAGTTCCCCTCTTGCTGGCCTCCCCCAGACAGAC
CACAGAAGCCTCTGAGCAGCGCAGCTGTGCTGTGCTGACAGCACAGACCCACACAGCCTGCCTG
GGAAGCCGGGCAGCTGGACAGCCAGGCCAGCTCTACCTTCCTGCGCTGAGCAGCCAGCCAGGTG
CTGCCGGGCGCCCACTCCCACAGTGACTGCGGGTCCCAGCAGGCCATGCAGCTGTGCCAAGGTG
CCTCCAGCATGGCGGCGGCCGAAGTGCCCAGCTACCTTGTGTCTCCTCAGACGGAGAAGCACCG
GCGGGCCCGCAACTGGACGGACGCCGAGATGCGTGGTCTCATGCTTGTCTGGGAGGAGTTCTTC
GACGAGCTCAAGCAGACCAAGCGCAATGCCAAGGTGTACGAGAAGATGGCCAGCAAGCTCTTCG
AGATGACGGGCGAGCGCCGGCTAGGCGAGGAGATCAAGATCAAAATCACCAACATGACCTTCCA
GTACAGGAAATTAAAATGCATGACAGATAGCGAGTCGGTCCCGCCGGACTGGCCCTATTACCTA
GCCATTGATAGGATTCTGGCCAAGGTCCCCGAGGCCTCTGAGGGCAAAGTGCCGGACGGCCAGC
AGCCGGGGCCCTCCACGTCCCAGACCGAGGCGTCTCTGTCGCCGTCTGCTAAGTCCACCCCTCT
GTACTTACCGTATACCCAGTGCTCCTATGAAGGCCGCTTCGAGGACGATCGCTCCGACAGCTCC
TCCAGCTTACTGTCCCTTAAGTTCAGGTCAGAGGAGCGTCCCGTGAAGAAGCGCAAGGCACAGA
GTGGCCACCTGCAGAGGAAGAAGTTGCGGCTGCTGGAGGCCATGCTGGAGGAACAGCGGCGGCT
GAGCCGTGCCATGGAGGAGACGTGCCGCGAGGTGCGCCGTGTGCTGGACCAGCAGAACATCCTG
CAGGTGCAGAGCCTGCAGCTGCAGGAGCGCATGATGAGCCTGCTGGAGAAGCTCATCGCCAAGT
CTAGTGGCTAGGCGGGTCAGGCCGCCCTGGGACCTGGGACGCGGCCAGGAGGCCAGGTCACTCC
ACAGGAACATCCTAGAGCACTCTCTCCAGGAGTCTCTCTCGGTGATACTCGAAATGGCTTTTGA
TATTAAACGTGTACTTTTCAGTATTGCCTGGAAGCAGGATTGGTGCTCTCTGGCTTGGAGGGCT
GCACCAGAGTGATCCCCTGCATGTGACCACAGCTCAGAGGCAGGCGGCCACCATGTGGGGGCCC
CTGGCCAGGAGGCTGCTGTGTCCTCCTCCCCAGCCTCATCCTTGGTGCTGGTGCTGATGTCACC
TCCGACCTCAACGCAGAGCCCGAGCTGCTTTCCAGCGGCCTTCCCTTTGCCTGGCGGCAGTGCT
ACTGTGGCCATAGCCTCCTAGGGCATGTCACTGCACAAGCAGCCACTCCTGTTCTCCCCAACCT
GGTACTGCAGTGAGCTGAGAAGCAGCCACAGATGGCTGTGAGTGCAGGAAGGGAAGGGATGGCC
CGAGGAGGTGGGGGGAGCCCACCAGGAGGGGGCCACACTAGGGCAGCCCCTACAGTTGCCAGAG
GTTGGGGAGCCAGAGCAGTCCATGGGCAACAGGGAGGGGTGAGCTGCTAGGAGGCATTTTGGTG
TCTCCCTGATGACTGAGAGGGTCTTGGCCACCATGTCTGGATCTGACGTCATGGGCGGACAGGG
CTGGGGTGGGAGCTGCAGCGGCCAGTGTGTTCACCATCTCCATCCTTTTGTTGCTGGCGTTGCA
GGGTAAAATCCCCAGTTCCTACATCCCACAGCCCAGGCTCAGCCACCCATGCCAAAATCCCAGT
CAAGGAGAGAGCAGGGGCGGGGCAAGAAAGGAGTTGTAGCCAGCGTGGCCATGCTGGGGAGCAC
AGAGCAGCTCTGATCTGCCCTCCACAGCTGACAGAAGCCTTGGGGTTGTACAGGAAAGGGGAAC
GAAGGTGCATTTGGGGTTTGCATAGCTGGCAGGATTAGGTGGTCCTGGGATCTGGCTGGCTGGT
GTTCCGCCCTGATTCTGGGAGGTCCTAGGAGAGCTGCTGTGGCAGGAGGGACACCCTCAGCTCC
CTGGCTGCTCTCCTGGGGGGTGGCCTCATCGTGCGGGTCTGGAAGACAGTGCCATCCTGGAATG
GGAGGGGGCTGCAGGTTCGGGACAGGGGGGTCTAGACCTAGGTATTGTAAAAGCTGGTGGTTAG
GGCCAGGATGTATCTCTGCGGCACAGCGCCTGCCTGGTAAACACGAGGTCCTGTGTTTGATTTC
TGGTACCAAAAAAAAAAAAAAAAGCTGGTCATTAGATGTCCCTGCAAATCCCTGAAATTAAATC
CTGAAAATTGCTCTA

hide sequence

RefSeq Acc Id:

XM_013506816 ⟹ XP_013362270

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955514	2,042,434 - 2,053,746 (+)	NCBI

Sequence:

show sequence

ACAGTCCTCTGACACTGTGGGCCAGGCAGCGCGAGCAGGTGCAGAGGGCTGGGCTCAGGCCCTG
GCCTAGTGGGTGCTCCCTGCAAACATCTTGTGTGGGTGCCTTGCTGCTCTGCAGGCATGGACTG
TGAGAGCGCTGATGGTTGGTGGTGTTGCAAGCTCCCCTCGGGAGCCTCCCCTGCTTCCACAGTG
GCTCAGGGCTCCGGAAAGGTGGAGAGGGTTGTGTCTTCACTGGGAGAGCCCTCGAAGATCTGCT
GGCCCTTCTGCTTCACGGACGATTAACAGCCAAGCCCTTGGCCCAGCTGGACTTCACTGTCCCC
AGCACAGCTGGCCTTCCCCGCTCCTGCTTCGCCACTGTGTCTGCACTGCCTGCCCCATCCTTTT
CAGCTTGTCAGCCCTTCCTTTGTGGCATATCTTCTCCAAGAAGTCCCCTGGTCAGCTCAGCAGG
GCTACTTCCTTCCAGCTCACTGTGCCCTCCCAAGGCTTGGTGGTCTGTATGGTAGTGATCCTGG
GGCGCAGTGCTCCGCCCACCAACCTGCAGAAGCCGCCACCTCAGGCTGTGGGGGCAGGTGTGAG
TGTTACTGACGGCCCGCCTAGCTGCTCTAGCCACTGTTCCCAAAGCAGAGCCAGCCCTGTGGCC
GGTGCCTGGAGAGAAGGCGAGGACCAAGACAGTCAGACCGGGGCCTTCTTGGGGCTCAGGTCCT
CTTTCTCTGCACGGGGTGGTGAGCACTTGGCTGGAGGCCCTGGAGGACGTCCCATGAGGTTTTG
CTGCCCTCTCAGTTGCTCTAAGCATTGTTGGGGGCTAGGGGGTCACTTCAACTGCCTGAATCTA
TCTCCTCATTGGTGGCAACTCCAGGGCCCAATGGCTTTGCCCTTCAGCGCTGCCTGTGTTCTGG
TCACTTCAGGGAAATGGAGCACCTCTTCTTCCCTGGTTTAGGTGTGGACAGCCAGGCCCTTGCA
CACCTGGCAAGTGTAGCTGGTGTTTCCAGAAACAAGACCCAGTCCCAGTGGAAGGTGCCCCTTG
GCAGGGCTACCCACAGCACGCCTGCACACTCCAGCTGCACAACAGAGGGCAAGCACCTGTTGCT
GCCACTTTCTTCCTTGCCAGGAGGTGCCAGGGGTACCTCTCCTGCCCCTTGCTGGGCTCGTGCT
CAGTGCCTGCAGTGGTGTTTGTTCCAGCCGTGACCACTTGGCTCTGAAAAGCATTCTGAGCTAG
TCCCTGAGTGAGGAGCCTGACACTTCCACCCCTGCACAGTGACGAGGAGGCGGCTGGGTAAGGT
GAGTACCAGGGCCACAGCTCAGCTCCAGGCTTCCTGGAGGCACACAGAAGTGATGAGGTTCCCC
TACAGTCTCATGCAGCCAGCAGGCCAGGGAGCCAGGGGACGGAGCCCAGGAACACGGCAGCCTC
AGGAACCCCATCTGGTCCAGGCGCCTGTGGTTGGGCAGAGGCAGCTGGCTCTGGAGTCTGCCAC
CTGCCTGGAGTGCTCAGGCATCTAGTCCGCTCAGCCCCTCAGCCCACTCCCCATCTGCTTGGGT
GGCTCAGCCCTTTAGTGGGCTCCCTCCCTGTGGTCCAGTGGGGACAGAGCAGTCGAGCCATGGG
CTTCTGGTGACAGCTCAAGGTGGGGGTCTGACCAAGGGCAGAGGACTATAGCAAGTGGCCTGGG
AAGATGTCAATGCCCAGCACACAAGCTGGGCACAGTCTGCCTGCCCTCCCTGCTGGACTAGGCA
GTCCAGTCGCTGACCCACTGGTACAGACCAGTCCTGAGGCGGAACCTGACCCATTGCTCCCCTA
CTGAGACAGTAGCCCTTCCTGTCCTCCATTCTGTGGCAGCTCTGCCTCCTACAACCTGGGCCCT
ACTGCCTCCCAACCAGGCTGCTATCACACTGCACCATCCCTGTTACACACACTGCCTGTTTCTA
GCAGTGGCCAAGGTCTTGGTTCTCCAGCCTCCAAATCCCCCTGCCCACTGGTACAGGCTCAGCT
CATGGCTGCAGGGGCCTAACTTCCCCTCCATGCTTTCTCCAGAGGCCAAGCCCTGTACTGCCTA
CCCAGTTAGGCCCAGTTTCCTGCAGTAGGGCAGCACCCTCCCCAGAGAGCACAGGCTGCCCTCT
GTGCAGCAGGACCAGGCTGGACCCTGGCGCCATGCCTGGGCCTCCCGAGGGTGCTCCTACTGAG
GCCTGACTGCCCCTCTCCCTGCAGGTGCTGCCGGGCGCCCACTCCCACAGTGACTGCGGGTCCC
AGCAGGCCATGCAGCTGTGCCAAGACGGAGAAGCACCGGCGGGCCCGCAACTGGACGGACGCCG
AGATGCGTGGTCTCATGCTTGTCTGGGAGGAGTTCTTCGACGAGCTCAAGCAGACCAAGCGCAA
TGCCAAGGTGTACGAGAAGATGGCCAGCAAGCTCTTCGAGATGACGGGCGAGCGCCGGCTAGGC
GAGGAGATCAAGATCAAAATCACCAACATGACCTTCCAGTACAGGAAATTAAAATGCATGACAG
ATAGCGAGTCGGTCCCGCCGGACTGGCCCTATTACCTAGCCATTGATAGGATTCTGGCCAAGGT
CCCCGAGGCCTCTGAGGGCAAAGTGCCGGACGGCCAGCAGCCGGGGCCCTCCACGTCCCAGACC
GAGGCGTCTCTGTCGCCGTCTGCTAAGTCCACCCCTCTGTACTTACCGTATACCCAGTGCTCCT
ATGAAGGCCGCTTCGAGGACGATCGCTCCGACAGCTCCTCCAGCTTACTGTCCCTTAAGTTCAG
GTCAGAGGAGCGTCCCGTGAAGAAGCGCAAGGCACAGAGTGGCCACCTGCAGAGGAAGAAGTTG
CGGCTGCTGGAGGCCATGCTGGAGGAACAGCGGCGGCTGAGCCGTGCCATGGAGGAGACGTGCC
GCGAGGTGCGCCGTGTGCTGGACCAGCAGAACATCCTGCAGGTGCAGAGCCTGCAGCTGCAGGA
GCGCATGATGAGCCTGCTGGAGAAGCTCATCGCCAAGTCTAGTGGCTAGGCGGGTCAGGCCGCC
CTGGGACCTGGGACGCGGCCAGGAGGCCAGGTCACTCCACAGGAACATCCTAGAGCACTCTCTC
CAGGAGTCTCTCTCGGTGATACTCGAAATGGCTTTTGATATTAAACGTGTACTTTTCAGTATTG
CCTGGAAGCAGGATTGGTGCTCTCTGGCTTGGAGGGCTGCACCAGAGTGATCCCCTGCATGTGA
CCACAGCTCAGAGGCAGGCGGCCACCATGTGGGGGCCCCTGGCCAGGAGGCTGCTGTGTCCTCC
TCCCCAGCCTCATCCTTGGTGCTGGTGCTGATGTCACCTCCGACCTCAACGCAGAGCCCGAGCT
GCTTTCCAGCGGCCTTCCCTTTGCCTGGCGGCAGTGCTACTGTGGCCATAGCCTCCTAGGGCAT
GTCACTGCACAAGCAGCCACTCCTGTTCTCCCCAACCTGGTACTGCAGTGAGCTGAGAAGCAGC
CACAGATGGCTGTGAGTGCAGGAAGGGAAGGGATGGCCCGAGGAGGTGGGGGGAGCCCACCAGG
AGGGGGCCACACTAGGGCAGCCCCTACAGTTGCCAGAGGTTGGGGAGCCAGAGCAGTCCATGGG
CAACAGGGAGGGGTGAGCTGCTAGGAGGCATTTTGGTGTCTCCCTGATGACTGAGAGGGTCTTG
GCCACCATGTCTGGATCTGACGTCATGGGCGGACAGGGCTGGGGTGGGAGCTGCAGCGGCCAGT
GTGTTCACCATCTCCATCCTTTTGTTGCTGGCGTTGCAGGGTAAAATCCCCAGTTCCTACATCC
CACAGCCCAGGCTCAGCCACCCATGCCAAAATCCCAGTCAAGGAGAGAGCAGGGGCGGGGCAAG
AAAGGAGTTGTAGCCAGCGTGGCCATGCTGGGGAGCACAGAGCAGCTCTGATCTGCCCTCCACA
GCTGACAGAAGCCTTGGGGTTGTACAGGAAAGGGGAACGAAGGTGCATTTGGGGTTTGCATAGC
TGGCAGGATTAGGTGGTCCTGGGATCTGGCTGGCTGGTGTTCCGCCCTGATTCTGGGAGGTCCT
AGGAGAGCTGCTGTGGCAGGAGGGACACCCTCAGCTCCCTGGCTGCTCTCCTGGGGGGTGGCCT
CATCGTGCGGGTCTGGAAGACAGTGCCATCCTGGAATGGGAGGGGGCTGCAGGTTCGGGACAGG
GGGGTCTAGACCTAGGTATTGTAAAAGCTGGTGGTTAGGGCCAGGATGTATCTCTGCGGCACAG
CGCCTGCCTGGTAAACACGAGGTCCTGTGTTTGATTTCTGGTACCAAAAAAAAAAAAAAAAGCT
GGTCATTAGATGTCCCTGCAAATCCCTGAAATTAAATCCTGAAAATTGCTCTA

hide sequence

RefSeq Acc Id:

XM_013506817 ⟹ XP_013362271

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955514	2,046,788 - 2,053,746 (+)	NCBI

Sequence:

show sequence

TCAGATGTAGGCCCCATTTTGAGCGCGGAGCTGCCTCAAGCAAGCTAGCGTGGTGCCTCCCGCC
CATGGTGCCTGGGCTGGGCCCGAGGCCCCGCCTGAGCGCCGTCCTTAACCCCGCAGGTGCCTCC
AGCATGGCGGCGGCCGAAGTGCCCAGCTACCTTGTGTCTCCTCAGACGGAGAAGCACCGGCGGG
CCCGCAACTGGACGGACGCCGAGATGCGTGGTCTCATGCTTGTCTGGGAGGAGTTCTTCGACGA
GCTCAAGCAGACCAAGCGCAATGCCAAGGTGTACGAGAAGATGGCCAGCAAGCTCTTCGAGATG
ACGGGCGAGCGCCGGCTAGGCGAGGAGATCAAGATCAAAATCACCAACATGACCTTCCAGTACA
GGTCAGAGGAGCGTCCCGTGAAGAAGCGCAAGGCACAGAGTGGCCACCTGCAGAGGAAGAAGTT
GCGGCTGCTGGAGGCCATGCTGGAGGAACAGCGGCGGCTGAGCCGTGCCATGGAGGAGACGTGC
CGCGAGGTGCGCCGTGTGCTGGACCAGCAGAACATCCTGCAGGTGCAGAGCCTGCAGCTGCAGG
AGCGCATGATGAGCCTGCTGGAGAAGCTCATCGCCAAGTCTAGTGGCTAGGCGGGTCAGGCCGC
CCTGGGACCTGGGACGCGGCCAGGAGGCCAGGTCACTCCACAGGAACATCCTAGAGCACTCTCT
CCAGGAGTCTCTCTCGGTGATACTCGAAATGGCTTTTGATATTAAACGTGTACTTTTCAGTATT
GCCTGGAAGCAGGATTGGTGCTCTCTGGCTTGGAGGGCTGCACCAGAGTGATCCCCTGCATGTG
ACCACAGCTCAGAGGCAGGCGGCCACCATGTGGGGGCCCCTGGCCAGGAGGCTGCTGTGTCCTC
CTCCCCAGCCTCATCCTTGGTGCTGGTGCTGATGTCACCTCCGACCTCAACGCAGAGCCCGAGC
TGCTTTCCAGCGGCCTTCCCTTTGCCTGGCGGCAGTGCTACTGTGGCCATAGCCTCCTAGGGCA
TGTCACTGCACAAGCAGCCACTCCTGTTCTCCCCAACCTGGTACTGCAGTGAGCTGAGAAGCAG
CCACAGATGGCTGTGAGTGCAGGAAGGGAAGGGATGGCCCGAGGAGGTGGGGGGAGCCCACCAG
GAGGGGGCCACACTAGGGCAGCCCCTACAGTTGCCAGAGGTTGGGGAGCCAGAGCAGTCCATGG
GCAACAGGGAGGGGTGAGCTGCTAGGAGGCATTTTGGTGTCTCCCTGATGACTGAGAGGGTCTT
GGCCACCATGTCTGGATCTGACGTCATGGGCGGACAGGGCTGGGGTGGGAGCTGCAGCGGCCAG
TGTGTTCACCATCTCCATCCTTTTGTTGCTGGCGTTGCAGGGTAAAATCCCCAGTTCCTACATC
CCACAGCCCAGGCTCAGCCACCCATGCCAAAATCCCAGTCAAGGAGAGAGCAGGGGCGGGGCAA
GAAAGGAGTTGTAGCCAGCGTGGCCATGCTGGGGAGCACAGAGCAGCTCTGATCTGCCCTCCAC
AGCTGACAGAAGCCTTGGGGTTGTACAGGAAAGGGGAACGAAGGTGCATTTGGGGTTTGCATAG
CTGGCAGGATTAGGTGGTCCTGGGATCTGGCTGGCTGGTGTTCCGCCCTGATTCTGGGAGGTCC
TAGGAGAGCTGCTGTGGCAGGAGGGACACCCTCAGCTCCCTGGCTGCTCTCCTGGGGGGTGGCC
TCATCGTGCGGGTCTGGAAGACAGTGCCATCCTGGAATGGGAGGGGGCTGCAGGTTCGGGACAG
GGGGGTCTAGACCTAGGTATTGTAAAAGCTGGTGGTTAGGGCCAGGATGTATCTCTGCGGCACA
GCGCCTGCCTGGTAAACACGAGGTCCTGTGTTTGATTTCTGGTACCAAAAAAAAAAAAAAAAGC
TGGTCATTAGATGTCCCTGCAAATCCCTGAAATTAAATCCTGAAAATTGCTCTA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005408815	(Get FASTA)	NCBI Sequence Viewer
	XP_005408817	(Get FASTA)	NCBI Sequence Viewer
	XP_013362270	(Get FASTA)	NCBI Sequence Viewer
	XP_013362271	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000011818
	ENSCLAP00000011818.1
	ENSCLAP00000011819
	ENSCLAP00000011819.1
	ENSCLAP00000011820
	ENSCLAP00000011820.1

RefSeq Acc Id:	XP_005408817 ⟸ XM_005408760
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2V8G3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQLCQGASSMAAAEVPSYLVSPQTEKHRRARNWTDAEMRGLMLVWEEFFDELKQTKRNAKVYEK MASKLFEMTGERRLGEEIKIKITNMTFQYRKLKCMTDSESVPPDWPYYLAIDRILAKVPEASEG KVPDGQQPGPSTSQTEASLSPSAKSTPLYLPYTQCSYEGRFEDDRSDSSSSLLSLKFRSEERPV KKRKAQSGHLQRKKLRLLEAMLEEQRRLSRAMEETCREVRRVLDQQNILQVQSLQLQERMMSLL EKLIAKSSG hide sequence

RefSeq Acc Id:	XP_005408815 ⟸ XM_005408758
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2V8M3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVPGLGPRPRLSAVLNPAGASSMAAAEVPSYLVSPQTEKHRRARNWTDAEMRGLMLVWEEFFDE LKQTKRNAKVYEKMASKLFEMTGERRLGEEIKIKITNMTFQYRKLKCMTDSESVPPDWPYYLAI DRILAKVPEASEGKVPDGQQPGPSTSQTEASLSPSAKSTPLYLPYTQCSYEGRFEDDRSDSSSS LLSLKFRSEERPVKKRKAQSGHLQRKKLRLLEAMLEEQRRLSRAMEETCREVRRVLDQQNILQV QSLQLQERMMSLLEKLIAKSSG hide sequence

RefSeq Acc Id:

XP_013362270 ⟸ XM_013506816

- Peptide Label:

isoform X3

- Sequence:

show sequence

MRGLMLVWEEFFDELKQTKRNAKVYEKMASKLFEMTGERRLGEEIKIKITNMTFQYRKLKCMTD
SESVPPDWPYYLAIDRILAKVPEASEGKVPDGQQPGPSTSQTEASLSPSAKSTPLYLPYTQCSY
EGRFEDDRSDSSSSLLSLKFRSEERPVKKRKAQSGHLQRKKLRLLEAMLEEQRRLSRAMEETCR
EVRRVLDQQNILQVQSLQLQERMMSLLEKLIAKSSG

hide sequence

RefSeq Acc Id:	XP_013362271 ⟸ XM_013506817
- Peptide Label:	isoform X4
- UniProtKB:	A0A8C2YNK7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVPGLGPRPRLSAVLNPAGASSMAAAEVPSYLVSPQTEKHRRARNWTDAEMRGLMLVWEEFFDE LKQTKRNAKVYEKMASKLFEMTGERRLGEEIKIKITNMTFQYRSEERPVKKRKAQSGHLQRKKL RLLEAMLEEQRRLSRAMEETCREVRRVLDQQNILQVQSLQLQERMMSLLEKLIAKSSG hide sequence

RefSeq Acc Id:

ENSCLAP00000011820 ⟸ ENSCLAT00000011958

RefSeq Acc Id:

ENSCLAP00000011819 ⟸ ENSCLAT00000011957

RefSeq Acc Id:

ENSCLAP00000011818 ⟸ ENSCLAT00000011956

Protein Domains

Myb/SANT-like DNA-binding

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000008147	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000011956	ENTREZGENE
	ENSCLAT00000011956.1	UniProtKB/TrEMBL
	ENSCLAT00000011957	ENTREZGENE
	ENSCLAT00000011957.1	UniProtKB/TrEMBL
	ENSCLAT00000011958	ENTREZGENE
	ENSCLAT00000011958.1	UniProtKB/TrEMBL
Gene3D-CATH	Homeodomain-like	UniProtKB/TrEMBL
InterPro	Myb/SANT-like_DNA-bd_dom_prot	UniProtKB/TrEMBL
	Myb_DNA-bind_4	UniProtKB/TrEMBL
NCBI Gene	Msantd1	ENTREZGENE
PANTHER	MYB/SANT-LIKE DNA-BINDING DOMAIN-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
	PTHR22666	UniProtKB/TrEMBL
Pfam	Myb_DNA-bind_4	UniProtKB/TrEMBL
UniProt	A0A8C2V8G3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C2V8M3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C2YNK7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-03	Msantd1	Myb/SANT DNA binding domain containing 1		Myb/SANT-like DNA-binding domain containing 1	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar