Slc51b (solute carrier family 51 beta subunit) - Rat Genome Database

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Gene: Slc51b (solute carrier family 51 beta subunit) Chinchilla lanigera
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Symbol: Slc51b
Name: solute carrier family 51 beta subunit
RGD ID: 8817271
Description: ENCODES a protein that exhibits bile acid transmembrane transporter activity (ortholog); protein heterodimerization activity (ortholog); transmembrane transporter activity (ortholog); INVOLVED IN bile acid and bile salt transport (ortholog); bile acid secretion (ortholog); organic substance transport (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); cholestasis (ortholog); cognitive disorder (ortholog); FOUND IN basolateral plasma membrane (ortholog); integral component of membrane (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: organic solute transporter subunit beta; solute carrier family 51, beta subunit
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545010,365,554 - 10,374,209 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545010,365,554 - 10,374,209 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References


Genomics

Comparative Map Data
Slc51b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545010,365,554 - 10,374,209 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545010,365,554 - 10,374,209 (-)NCBIChiLan1.0ChiLan1.0
SLC51B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1565,045,387 - 65,053,397 (+)EnsemblGRCh38hg38GRCh38
GRCh381565,045,387 - 65,053,397 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371565,337,725 - 65,345,735 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361563,129,366 - 63,132,592 (+)NCBINCBI36hg18NCBI36
Celera1542,215,879 - 42,223,900 (+)NCBI
Cytogenetic Map15q22.31NCBI
HuRef1542,162,361 - 42,170,379 (+)NCBIHuRef
CHM1_11565,457,493 - 65,465,519 (+)NCBICHM1_1
Slc51b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39965,320,035 - 65,330,055 (-)NCBIGRCm39mm39
GRCm39 Ensembl965,319,996 - 65,330,237 (-)Ensembl
GRCm38965,412,753 - 65,422,773 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl965,412,714 - 65,422,955 (-)EnsemblGRCm38mm10GRCm38
MGSCv37965,260,560 - 65,270,580 (-)NCBIGRCm37mm9NCBIm37
MGSCv36965,210,759 - 65,220,779 (-)NCBImm8
Celera962,642,443 - 62,652,442 (-)NCBICelera
Cytogenetic Map9CNCBI
Slc51b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2865,931,891 - 65,934,893 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl865,931,890 - 65,940,145 (-)Ensembl
Rnor_6.0870,930,196 - 70,938,559 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl870,930,347 - 70,932,986 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0870,622,113 - 70,630,459 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4869,661,815 - 69,669,889 (-)NCBIRGSC3.4rn4RGSC3.4
Celera865,329,645 - 65,337,941 (-)NCBICelera
Cytogenetic Map8q24NCBI
SLC51B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11562,268,738 - 62,277,160 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1562,268,738 - 62,277,160 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01543,988,512 - 43,992,939 (+)NCBIMhudiblu_PPA_v0panPan3
SLC51B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13029,425,489 - 29,436,204 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3029,425,860 - 29,436,073 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3029,342,976 - 29,366,128 (+)NCBI
ROS_Cfam_1.03029,602,279 - 29,625,401 (+)NCBI
UMICH_Zoey_3.13029,535,026 - 29,558,167 (+)NCBI
UNSW_CanFamBas_1.03029,596,496 - 29,619,801 (+)NCBI
UU_Cfam_GSD_1.03029,837,521 - 29,860,670 (+)NCBI
Slc51b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640107,507,751 - 107,531,583 (+)NCBI
SpeTri2.0NW_00493647125,355,849 - 25,379,481 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC51B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1163,081,180 - 163,089,488 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11163,081,145 - 163,089,491 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SLC51B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12618,533,254 - 18,541,881 (-)NCBI
ChlSab1.1 Ensembl2618,529,642 - 18,536,877 (-)Ensembl
Vero_WHO_p1.0NW_023666048122,891,731 - 122,900,217 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000017061   ⟹   ENSCLAP00000016895
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495545010,365,554 - 10,374,209 (-)Ensembl
RefSeq Acc Id: XM_005393727   ⟹   XP_005393784
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545010,365,554 - 10,374,209 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005393784 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005393784   ⟸   XM_005393727
- Sequence:
RefSeq Acc Id: ENSCLAP00000016895   ⟸   ENSCLAT00000017061


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011594 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000016895 ENTREZGENE
Ensembl Transcript ENSCLAT00000017061 ENTREZGENE
NCBI Gene Slc51b ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Slc51b  solute carrier family 51 beta subunit    solute carrier family 51, beta subunit  Symbol and/or name change 5135510 APPROVED