Hspb1 (heat shock protein family B (small) member 1) - Rat Genome Database

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Gene: Hspb1 (heat shock protein family B (small) member 1) Chinchilla lanigera
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Symbol: Hspb1
Name: heat shock protein family B (small) member 1
RGD ID: 8814501
Description: ENCODES a protein that exhibits identical protein binding (ortholog); protein folding chaperone (ortholog); protein homodimerization activity (ortholog); INVOLVED IN aging (ortholog); anterograde axonal protein transport (ortholog); cellular response to butyrate (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); Alzheimer's disease (ortholog); Brain Injuries (ortholog); FOUND IN axon (ortholog); cardiac myofibril (ortholog); contractile fiber (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: heat shock 27kDa protein 1; heat shock protein beta-1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049558447,790 - 10,004 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049558448,094 - 9,565 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References


Genomics

Comparative Map Data
Hspb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049558447,790 - 10,004 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049558448,094 - 9,565 (+)NCBIChiLan1.0ChiLan1.0
HSPB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl776,302,673 - 76,304,295 (+)EnsemblGRCh38hg38GRCh38
GRCh38776,302,673 - 76,304,292 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37775,931,990 - 75,933,609 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36775,769,859 - 75,771,548 (+)NCBINCBI36hg18NCBI36
Build 34775,576,573 - 75,578,263NCBI
Celera770,800,374 - 70,802,113 (+)NCBI
Cytogenetic Map7q11.23NCBI
HuRef771,018,196 - 71,019,935 (+)NCBIHuRef
CHM1_1775,861,968 - 75,863,707 (+)NCBICHM1_1
CRA_TCAGchr7v2775,264,939 - 75,266,678 (+)NCBI
Hspb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395135,916,773 - 135,918,417 (+)NCBIGRCm39mm39
GRCm39 Ensembl5135,916,773 - 135,918,417 (+)Ensembl
GRCm385135,887,919 - 135,889,563 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5135,887,919 - 135,889,563 (+)EnsemblGRCm38mm10GRCm38
MGSCv375136,363,789 - 136,365,433 (+)NCBIGRCm37mm9NCBIm37
MGSCv365136,172,686 - 136,174,064 (+)NCBImm8
Celera5132,896,482 - 132,898,126 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map575.51NCBI
Hspb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21220,794,014 - 20,795,675 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1220,794,028 - 20,795,743 (-)Ensembl
Rnor_6.01223,839,390 - 23,841,051 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1223,839,399 - 23,841,049 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01225,837,102 - 25,838,663 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41221,911,223 - 21,912,784 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11221,898,486 - 21,900,048 (-)NCBI
Celera1222,557,404 - 22,559,067 (-)NCBICelera
Cytogenetic Map12q12NCBI
HSPB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1782,751,385 - 82,753,109 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl782,751,523 - 82,752,984 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0767,716,021 - 67,717,762 (-)NCBIMhudiblu_PPA_v0panPan3
HSPB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.167,487,164 - 7,488,576 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl67,487,250 - 7,488,576 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha69,182,749 - 9,184,173 (+)NCBI
ROS_Cfam_1.067,307,626 - 7,309,048 (+)NCBI
ROS_Cfam_1.0 Ensembl67,307,712 - 7,309,048 (+)Ensembl
UMICH_Zoey_3.167,276,667 - 7,278,079 (+)NCBI
UNSW_CanFamBas_1.067,239,649 - 7,241,061 (+)NCBI
UU_Cfam_GSD_1.067,403,114 - 7,404,545 (+)NCBI
Hspb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344131,924,637 - 131,926,212 (+)NCBI
SpeTri2.0NW_0049365432,110,351 - 2,111,896 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HSPB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl310,037,936 - 10,039,915 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1310,038,074 - 10,039,441 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.239,925,991 - 9,927,359 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HSPB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12810,442,530 - 10,443,804 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2810,442,398 - 10,443,855 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660705,976,665 - 5,978,438 (-)NCBIVero_WHO_p1.0
Hspb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474014,940,161 - 14,941,561 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000001145   ⟹   ENSCLAP00000001104
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049558447,790 - 10,004 (+)Ensembl
RefSeq Acc Id: XM_005415130   ⟹   XP_005415187
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049558448,094 - 9,565 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005415187 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005415187   ⟸   XM_005415130
- Sequence:
RefSeq Acc Id: ENSCLAP00000001104   ⟸   ENSCLAT00000001145


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000000848 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000001104 ENTREZGENE
Ensembl Transcript ENSCLAT00000001145 ENTREZGENE
NCBI Gene LOC102017834 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Hspb1  heat shock protein family B (small) member 1    heat shock 27kDa protein 1  Symbol and/or name change 5135510 APPROVED
2015-08-25 Hspb1  heat shock 27kDa protein 1  LOC102017834  heat shock protein beta-1-like  Symbol and/or name change 5135510 APPROVED