Dand5 (DAN domain BMP antagonist family member 5) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Dand5 (DAN domain BMP antagonist family member 5) Chinchilla lanigera
Analyze
Symbol: Dand5
Name: DAN domain BMP antagonist family member 5
RGD ID: 8814457
Description: ENCODES a protein that exhibits morphogen activity (ortholog); INVOLVED IN atrial septum development (ortholog); determination of heart left/right asymmetry (ortholog); determination of left/right asymmetry in lateral mesoderm (ortholog); ASSOCIATED WITH alpha-mannosidosis (ortholog); Charcot-Marie-Tooth disease dominant intermediate B (ortholog); episodic ataxia type 2 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: DAN domain family member 5; DAN domain family member 5, BMP antagonist
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541532,012,637 - 32,015,965 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541532,012,637 - 32,015,965 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Dand5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541532,012,637 - 32,015,965 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541532,012,637 - 32,015,965 (+)NCBIChiLan1.0ChiLan1.0
DAND5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381912,969,576 - 12,974,760 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1912,965,159 - 12,974,760 (+)EnsemblGRCh38hg38GRCh38
GRCh371913,080,390 - 13,085,574 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361912,941,432 - 12,946,567 (+)NCBINCBI36Build 36hg18NCBI36
Build 341912,941,431 - 12,946,567NCBI
Celera1912,970,172 - 12,975,308 (+)NCBICelera
Cytogenetic Map19p13.13NCBI
HuRef1912,652,352 - 12,657,486 (+)NCBIHuRef
CHM1_11913,080,941 - 13,086,074 (+)NCBICHM1_1
T2T-CHM13v2.01913,094,079 - 13,099,264 (+)NCBIT2T-CHM13v2.0
Dand5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39885,542,034 - 85,558,894 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl885,542,033 - 85,559,038 (-)EnsemblGRCm39 Ensembl
GRCm38884,815,405 - 84,832,265 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl884,815,404 - 84,832,409 (-)EnsemblGRCm38mm10GRCm38
MGSCv37887,339,304 - 87,356,164 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36887,705,510 - 87,712,928 (-)NCBIMGSCv36mm8
Celera889,114,555 - 89,131,184 (-)NCBICelera
Cytogenetic Map8C3NCBI
cM Map841.17NCBI
Dand5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81940,231,061 - 40,245,329 (+)NCBIGRCr8
mRatBN7.21923,330,917 - 23,340,486 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1923,334,164 - 23,339,589 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01925,929,704 - 25,937,852 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1925,930,601 - 25,936,026 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01936,903,899 - 36,913,473 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41924,989,652 - 24,995,307 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1922,889,653 - 22,897,568 (+)NCBICelera
Cytogenetic Map19q11NCBI
DAND5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22017,888,731 - 17,903,075 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11916,889,684 - 16,903,697 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01912,529,830 - 12,536,052 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
DAND5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12049,225,351 - 49,228,940 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2049,225,990 - 49,228,940 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2049,097,579 - 49,101,217 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02049,742,161 - 49,745,799 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2049,742,849 - 49,745,799 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12048,953,402 - 48,957,039 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02049,379,663 - 49,383,301 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02049,622,424 - 49,626,062 (-)NCBIUU_Cfam_GSD_1.0
Dand5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118208,328,998 - 208,332,049 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366592,022,657 - 2,025,353 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366592,022,657 - 2,025,353 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DAND5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1266,068,722 - 66,073,537 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2266,432,010 - 66,436,411 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DAND5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1611,648,881 - 11,652,815 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl611,649,331 - 11,652,567 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660748,132,746 - 8,136,701 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dand5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624901535,137 - 538,384 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624901534,828 - 538,923 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005381142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01016708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCLAT00000016760   ⟹   ENSCLAP00000016596
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541532,012,637 - 32,015,965 (+)Ensembl
RefSeq Acc Id: XM_005381142   ⟹   XP_005381199
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541532,012,637 - 32,015,965 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005381199 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000016596
  ENSCLAP00000016596.1
Reference Protein Sequences
RefSeq Acc Id: XP_005381199   ⟸   XM_005381142
- UniProtKB: A0A8C2VJL6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000016596   ⟸   ENSCLAT00000016760
Protein Domains
CTCK


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011402 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000016760 ENTREZGENE
  ENSCLAT00000016760.1 UniProtKB/TrEMBL
Gene3D-CATH 2.10.90.10 UniProtKB/TrEMBL
InterPro Cerberus UniProtKB/TrEMBL
  Cys_knot_C UniProtKB/TrEMBL
  Cystine-knot_cytokine UniProtKB/TrEMBL
  DAN UniProtKB/TrEMBL
NCBI Gene Dand5 ENTREZGENE
PANTHER DAN DOMAIN FAMILY MEMBER 5 UniProtKB/TrEMBL
  PTHR15273 UniProtKB/TrEMBL
Pfam DAN UniProtKB/TrEMBL
SMART SM00041 UniProtKB/TrEMBL
UniProt A0A8C2VJL6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Dand5  DAN domain BMP antagonist family member 5    DAN domain family member 5, BMP antagonist  Symbol and/or name change 5135510 APPROVED