Tap1 (transporter 1, ATP binding cassette subfamily B member) - Rat Genome Database

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Gene: Tap1 (transporter 1, ATP binding cassette subfamily B member) Chinchilla lanigera
Analyze
Symbol: Tap1
Name: transporter 1, ATP binding cassette subfamily B member
RGD ID: 8812671
Description: ENCODES a protein that exhibits ABC-type peptide antigen transporter activity (ortholog); ADP binding (ortholog); ATP binding (ortholog); INVOLVED IN antigen processing and presentation of endogenous peptide antigen via MHC class I (ortholog); cytosol to endoplasmic reticulum transport (ortholog); defense response (ortholog); ASSOCIATED WITH allergic disease (ortholog); ankylosing spondylitis (ortholog); asthma (ortholog); FOUND IN centriolar satellite (ortholog); endoplasmic reticulum (ortholog); integral component of endoplasmic reticulum membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: antigen peptide transporter 1; transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554371,504,947 - 1,511,097 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554371,504,549 - 1,511,110 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References


Genomics

Comparative Map Data
Tap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554371,504,947 - 1,511,097 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554371,504,549 - 1,511,110 (-)NCBIChiLan1.0ChiLan1.0
TAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl632,845,209 - 32,853,816 (-)EnsemblGRCh38hg38GRCh38
GRCh38632,845,209 - 32,853,704 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37632,812,986 - 32,821,481 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36632,920,964 - 32,929,726 (-)NCBINCBI36hg18NCBI36
Build 34632,920,964 - 32,929,726NCBI
Celera634,361,879 - 34,370,641 (-)NCBI
Cytogenetic Map6p21.32NCBI
HuRef632,555,192 - 32,563,954 (-)NCBIHuRef
CHM1_1632,813,813 - 32,822,573 (-)NCBICHM1_1
Tap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391734,406,530 - 34,416,199 (+)NCBIGRCm39mm39
GRCm39 Ensembl1734,406,527 - 34,416,199 (+)Ensembl
GRCm381734,187,556 - 34,197,225 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1734,187,553 - 34,197,225 (+)EnsemblGRCm38mm10GRCm38
MGSCv371734,324,501 - 34,334,170 (+)NCBIGRCm37mm9NCBIm37
MGSCv361733,798,168 - 33,807,011 (+)NCBImm8
Celera1736,941,149 - 36,950,813 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1717.98NCBI
Tap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2204,656,262 - 4,666,634 (-)NCBI
Rnor_6.0 Ensembl203,979,035 - 3,989,669 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0203,979,302 - 3,989,669 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0206,058,850 - 6,069,217 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4204,790,363 - 4,800,730 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1204,791,029 - 4,800,898 (-)NCBI
Celera206,257,317 - 6,267,656 (-)NCBICelera
RH 3.4 Map2060.6RGD
Cytogenetic Map20p12NCBI
TAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1633,530,170 - 33,538,978 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl633,530,171 - 33,538,978 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0632,414,665 - 32,423,488 (-)NCBIMhudiblu_PPA_v0panPan3
TAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1122,424,049 - 2,432,165 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl122,378,126 - 2,432,303 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha122,505,714 - 2,513,929 (-)NCBI
ROS_Cfam_1.0122,705,692 - 2,714,297 (-)NCBI
UMICH_Zoey_3.1122,423,131 - 2,431,320 (-)NCBI
UNSW_CanFamBas_1.0122,504,597 - 2,512,789 (-)NCBI
UU_Cfam_GSD_1.0122,578,932 - 2,587,126 (-)NCBI
Tap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494638,052,572 - 38,060,923 (-)NCBI
SpeTri2.0NW_00493647625,899,514 - 25,907,690 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl725,062,773 - 25,071,862 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1725,062,772 - 25,071,989 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2729,274,670 - 29,283,290 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TAP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11739,252,000 - 39,260,195 (+)NCBI
Vero_WHO_p1.0NW_02366604432,632,142 - 32,640,337 (-)NCBI
Tap1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475423,815,464 - 23,822,480 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000011811   ⟹   ENSCLAP00000011673
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554371,504,947 - 1,511,097 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000011812   ⟹   ENSCLAP00000011674
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554371,504,947 - 1,511,097 (-)Ensembl
RefSeq Acc Id: XM_013516935   ⟹   XP_013372389
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554371,504,549 - 1,511,110 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013372389 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013372389   ⟸   XM_013516935
- Sequence:
RefSeq Acc Id: ENSCLAP00000011674   ⟸   ENSCLAT00000011812
RefSeq Acc Id: ENSCLAP00000011673   ⟸   ENSCLAT00000011811


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008052 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000011673 ENTREZGENE
Ensembl Transcript ENSCLAT00000011811 ENTREZGENE
NCBI Gene Tap1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Tap1  transporter 1, ATP binding cassette subfamily B member    transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)  Symbol and/or name change 5135510 APPROVED