Abat (4-aminobutyrate aminotransferase) - Rat Genome Database

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Gene: Abat (4-aminobutyrate aminotransferase) Chinchilla lanigera
Analyze
Symbol: Abat
Name: 4-aminobutyrate aminotransferase
RGD ID: 8812203
Description: ENCODES a protein that exhibits 4-aminobutyrate transaminase activity (ortholog); 4-aminobutyrate:2-oxoglutarate transaminase activity (ortholog); identical protein binding (ortholog); INVOLVED IN behavioral response to cocaine (ortholog); cerebellum development (ortholog); copulation (ortholog); PARTICIPATES IN 2-hydroxyglutaric aciduria pathway; 3-hydroxy-3-methylglutaryl-CoA lyase deficiency pathway; 3-hydroxyisobutyric aciduria pathway; ASSOCIATED WITH Abnormal Reflexes (ortholog); Alzheimer's disease (ortholog); Anorexia (ortholog); FOUND IN 4-aminobutyrate transaminase complex (ortholog); mitochondrial matrix (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 4-aminobutyrate aminotransferase, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554429,422,849 - 9,516,103 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554429,422,849 - 9,516,054 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Abat
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554429,422,849 - 9,516,103 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554429,422,849 - 9,516,054 (-)NCBIChiLan1.0ChiLan1.0
ABAT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38168,674,617 - 8,784,570 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl168,674,596 - 8,784,575 (+)EnsemblGRCh38hg38GRCh38
GRCh37168,768,474 - 8,878,427 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36168,675,928 - 8,785,933 (+)NCBINCBI36Build 36hg18NCBI36
Build 34168,675,945 - 8,785,932NCBI
Celera168,937,805 - 9,047,806 (+)NCBICelera
Cytogenetic Map16p13.2NCBI
HuRef168,691,116 - 8,800,895 (+)NCBIHuRef
CHM1_1168,768,357 - 8,878,342 (+)NCBICHM1_1
T2T-CHM13v2.0168,707,289 - 8,817,330 (+)NCBIT2T-CHM13v2.0
Abat
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39168,331,293 - 8,439,432 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl168,331,293 - 8,439,432 (+)EnsemblGRCm39 Ensembl
GRCm38168,513,429 - 8,621,568 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl168,513,429 - 8,621,568 (+)EnsemblGRCm38mm10GRCm38
MGSCv37168,513,522 - 8,621,661 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36168,428,810 - 8,536,889 (+)NCBIMGSCv36mm8
Celera169,158,444 - 9,266,822 (+)NCBICelera
Cytogenetic Map16A1NCBI
cM Map164.06NCBI
Abat
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8107,503,351 - 7,599,474 (-)NCBIGRCr8
mRatBN7.2106,996,688 - 7,092,835 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl106,999,819 - 7,092,835 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1011,705,905 - 11,800,150 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01011,202,332 - 11,296,694 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0106,853,860 - 6,945,716 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0107,093,406 - 7,200,439 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl107,093,405 - 7,200,499 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0105,894,187 - 6,002,068 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4107,040,725 - 7,137,154 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1107,040,724 - 7,137,154 (-)NCBI
Celera105,995,207 - 6,088,218 (-)NCBICelera
Cytogenetic Map10q12NCBI
ABAT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2189,201,692 - 9,323,956 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11612,999,815 - 13,108,612 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0167,609,282 - 7,718,049 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1168,850,010 - 8,958,420 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl168,888,178 - 8,958,420 (+)Ensemblpanpan1.1panPan2
ABAT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1633,385,779 - 33,471,348 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl633,376,996 - 33,471,326 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha634,776,452 - 34,862,027 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0633,584,479 - 33,670,069 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl633,584,487 - 33,670,052 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1633,386,823 - 33,472,421 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0633,256,654 - 33,342,147 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0633,678,493 - 33,764,059 (-)NCBIUU_Cfam_GSD_1.0
Abat
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344109,698,256 - 109,775,982 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365307,543,682 - 7,622,667 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365307,543,743 - 7,621,392 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABAT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl333,908,970 - 34,015,474 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1333,913,068 - 33,960,804 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2334,642,449 - 34,682,257 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ABAT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.158,274,310 - 8,380,973 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl58,315,952 - 8,379,549 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606821,840,065 - 21,946,865 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Abat
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248246,141,213 - 6,202,936 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248246,112,644 - 6,202,936 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000017818   ⟹   ENSCLAP00000017645
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554429,422,849 - 9,490,613 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000017819   ⟹   ENSCLAP00000017646
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554429,425,842 - 9,516,103 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000017820   ⟹   ENSCLAP00000017647
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554429,425,842 - 9,470,496 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000017821   ⟹   ENSCLAP00000017648
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554429,444,011 - 9,467,765 (-)Ensembl
RefSeq Acc Id: XM_005391219   ⟹   XP_005391276
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554429,422,849 - 9,516,054 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005391220   ⟹   XP_005391277
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554429,422,849 - 9,490,613 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005391276 (Get FASTA)   NCBI Sequence Viewer  
  XP_005391277 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000017645
  ENSCLAP00000017645.1
  ENSCLAP00000017646
  ENSCLAP00000017646.1
  ENSCLAP00000017647.1
  ENSCLAP00000017648.1
Reference Protein Sequences
RefSeq Acc Id: XP_005391276   ⟸   XM_005391219
- UniProtKB: A0A8C2VM78 (UniProtKB/TrEMBL),   A0A8C2VUD5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005391277   ⟸   XM_005391220
- UniProtKB: A0A8C2VM78 (UniProtKB/TrEMBL),   A0A8C2VUD5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000017646   ⟸   ENSCLAT00000017819
RefSeq Acc Id: ENSCLAP00000017645   ⟸   ENSCLAT00000017818
RefSeq Acc Id: ENSCLAP00000017647   ⟸   ENSCLAT00000017820
RefSeq Acc Id: ENSCLAP00000017648   ⟸   ENSCLAT00000017821


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012100 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000017818 ENTREZGENE
  ENSCLAT00000017818.1 UniProtKB/TrEMBL
  ENSCLAT00000017819 ENTREZGENE
  ENSCLAT00000017819.1 UniProtKB/TrEMBL
  ENSCLAT00000017820.1 UniProtKB/TrEMBL
  ENSCLAT00000017821.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.640.10 UniProtKB/TrEMBL
  3.90.1150.10 UniProtKB/TrEMBL
InterPro 4NH2But_aminotransferase_euk UniProtKB/TrEMBL
  Aminotrans_3 UniProtKB/TrEMBL
  Aminotrans_3_PPA_site UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase_major UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase_small UniProtKB/TrEMBL
NCBI Gene Abat ENTREZGENE
PANTHER 4-AMINOBUTYRATE AMINOTRANSFERASE, MITOCHONDRIAL UniProtKB/TrEMBL
  AMINOTRANSFERASE UniProtKB/TrEMBL
Pfam Aminotran_3 UniProtKB/TrEMBL
PIRSF Transaminase_4ab_Lys_Orn UniProtKB/TrEMBL
PROSITE AA_TRANSFER_CLASS_3 UniProtKB/TrEMBL
Superfamily-SCOP SSF53383 UniProtKB/TrEMBL
UniProt A0A8C2VM78 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VP84_CHILA UniProtKB/TrEMBL
  A0A8C2VUD5 ENTREZGENE, UniProtKB/TrEMBL