Myog (myogenin) - Rat Genome Database

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Gene: Myog (myogenin) Chinchilla lanigera
Analyze
Symbol: Myog
Name: myogenin
RGD ID: 8811892
Description: ENCODES a protein that exhibits chromatin DNA binding (ortholog); cis-regulatory region sequence-specific DNA binding (ortholog); DNA-binding transcription activator activity (ortholog); INVOLVED IN cellular response to estradiol stimulus (ortholog); cellular response to growth factor stimulus (ortholog); cellular response to lithium ion (ortholog); ASSOCIATED WITH Experimental Arthritis (ortholog); Experimental Autoimmune Myasthenia Gravis (ortholog); familial adult myoclonic epilepsy 5 (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); protein-DNA complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: myogenin (myogenic factor 4)
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540639,099,716 - 39,102,501 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540639,099,044 - 39,102,479 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
cellular response to estradiol stimulus  (ISO)
cellular response to growth factor stimulus  (ISO)
cellular response to lithium ion  (ISO)
cellular response to magnetism  (ISO)
cellular response to retinoic acid  (ISO)
cellular response to tumor necrosis factor  (ISO)
muscle cell differentiation  (ISO)
muscle organ development  (ISO)
myoblast differentiation  (ISO)
myotube differentiation  (ISO)
negative regulation of cell population proliferation  (ISO)
negative regulation of glycolytic process  (ISO)
ossification  (ISO)
positive regulation of DNA-templated transcription  (ISO)
positive regulation of muscle atrophy  (ISO)
positive regulation of myoblast differentiation  (ISO)
positive regulation of myotube differentiation  (ISO)
positive regulation of oxidative phosphorylation  (ISO)
positive regulation of skeletal muscle fiber development  (ISO)
positive regulation of transcription by RNA polymerase II  (ISO)
regulation of cell cycle  (ISO)
regulation of myoblast fusion  (ISO)
regulation of skeletal muscle satellite cell proliferation  (ISO)
response to denervation involved in regulation of muscle adaptation  (ISO)
response to electrical stimulus involved in regulation of muscle adaptation  (ISO)
response to gravity  (ISO)
response to muscle activity  (ISO)
response to muscle activity involved in regulation of muscle adaptation  (ISO)
skeletal muscle atrophy  (ISO)
skeletal muscle fiber development  (ISO)
skeletal muscle tissue development  (ISO)
skeletal muscle tissue regeneration  (ISO)
striated muscle atrophy  (ISO)

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Myog
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540639,099,716 - 39,102,501 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540639,099,044 - 39,102,479 (-)NCBIChiLan1.0ChiLan1.0
MYOG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381203,083,129 - 203,086,012 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1203,083,129 - 203,086,012 (-)EnsemblGRCh38hg38GRCh38
GRCh371203,052,257 - 203,055,140 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361201,318,880 - 201,322,000 (-)NCBINCBI36Build 36hg18NCBI36
Build 341199,783,916 - 199,786,823NCBI
Celera1176,181,515 - 176,184,632 (-)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1174,217,862 - 174,220,769 (-)NCBIHuRef
CHM1_11204,474,600 - 204,477,509 (-)NCBICHM1_1
T2T-CHM13v2.01202,345,882 - 202,348,764 (-)NCBIT2T-CHM13v2.0
Myog
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391134,217,742 - 134,220,286 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1134,217,727 - 134,220,286 (+)EnsemblGRCm39 Ensembl
GRCm381134,290,004 - 134,292,548 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1134,289,989 - 134,292,548 (+)EnsemblGRCm38mm10GRCm38
MGSCv371136,186,581 - 136,189,125 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361136,106,424 - 136,108,961 (+)NCBIMGSCv36mm8
Celera1136,900,556 - 136,903,100 (+)NCBICelera
Cytogenetic Map1E4NCBI
cM Map158.18NCBI
Myog
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81348,297,476 - 48,300,065 (+)NCBIGRCr8
mRatBN7.21345,745,455 - 45,748,044 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1345,745,436 - 45,748,039 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1348,353,288 - 48,355,876 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01349,641,358 - 49,643,946 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01346,906,096 - 46,908,691 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01351,126,459 - 51,129,048 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1351,126,459 - 51,129,048 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01356,182,747 - 56,185,336 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41347,243,712 - 47,246,301 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11347,257,754 - 47,260,344 (+)NCBI
Celera1346,073,572 - 46,076,161 (+)NCBICelera
Cytogenetic Map13q13NCBI
MYOG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2146,291,785 - 46,299,091 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1146,258,868 - 46,263,290 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01178,684,933 - 178,687,971 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11182,979,700 - 182,982,607 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1182,979,700 - 182,982,611 (-)Ensemblpanpan1.1panPan2
MYOG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.17112,116 - 114,604 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl7112,034 - 113,892 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha7167,989 - 170,338 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.07122,772 - 125,124 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl7122,763 - 125,152 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.17111,008 - 113,379 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.07220,521 - 222,887 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.07243,050 - 245,421 (+)NCBIUU_Cfam_GSD_1.0
Myog
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934472,272,365 - 72,275,138 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365671,507,042 - 1,509,815 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365671,507,042 - 1,509,814 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MYOG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9113,782,284 - 113,787,340 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19113,783,233 - 113,785,312 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29125,243,803 - 125,245,882 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap9q2.1-q2.6NCBI
MYOG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12526,264,872 - 26,269,652 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2526,266,717 - 26,268,867 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605527,042,619 - 27,045,566 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Myog
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248077,749,852 - 7,753,336 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248077,742,926 - 7,753,149 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000020597   ⟹   ENSCLAP00000020400
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540639,099,716 - 39,102,501 (-)Ensembl
RefSeq Acc Id: XM_005375246   ⟹   XP_005375303
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540639,099,785 - 39,102,479 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005375247   ⟹   XP_005375304
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540639,099,044 - 39,102,479 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005375303 (Get FASTA)   NCBI Sequence Viewer  
  XP_005375304 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000020400
  ENSCLAP00000020400.1
RefSeq Acc Id: XP_005375304   ⟸   XM_005375247
- UniProtKB: A0A8C2VW46 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005375303   ⟸   XM_005375246
- UniProtKB: A0A8C2VW46 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000020400   ⟸   ENSCLAT00000020597
Protein Domains
bHLH


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000013979 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000020597 ENTREZGENE
  ENSCLAT00000020597.1 UniProtKB/TrEMBL
Gene3D-CATH 4.10.280.10 UniProtKB/TrEMBL
InterPro bHLH_dom UniProtKB/TrEMBL
  HLH_DNA-bd_sf UniProtKB/TrEMBL
  MyoD_N UniProtKB/TrEMBL
  Myogenic_factor UniProtKB/TrEMBL
NCBI Gene Myog ENTREZGENE
PANTHER MYOGENIN UniProtKB/TrEMBL
  PTHR11534 UniProtKB/TrEMBL
Pfam Basic UniProtKB/TrEMBL
  HLH UniProtKB/TrEMBL
PROSITE BHLH UniProtKB/TrEMBL
SMART BASIC UniProtKB/TrEMBL
  HLH UniProtKB/TrEMBL
Superfamily-SCOP SSF47459 UniProtKB/TrEMBL
UniProt A0A8C2VW46 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-23 Myog  myogenin    myogenin (myogenic factor 4)  Symbol and/or name change 5135510 APPROVED